| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_05 |
| Marker Type | SSR |
| Map Position | 51.6 |
| Annotation | |
| Source Name | emk04D19 |
| Source Type | genomic |
| Source Sequence | ACCATCGTTAGAAAAGTTACAACTCAGGAAAAATCATAAC TCTTCGAAAAAATCAGAATCCTTCGAAAAAGTCACAACTT TTCGCAAAAGTCACAATCCTTCAATGTAAAAAATTATCTG TTAGAACCCGTATTGTGGTGTTTTGGATCAATTACGAATT TTGGACCAAAGAGATATTATTGAAAATTTGGGATTTAAGT TGAATATTTCAAAGAGATGTGTTTAAACCTATATACACAC ACACACACACACACACACACACACACACACACACACGTAC ACATACAAGACCATTTATTAATTTCTTTCACCAAATGTTT TGCTAAACACATGTAAATCTAGAGTTTTGATAAGGTTGGC CCACTTCATTTTGTCACAATATTATTGGACTAAGTGTGGG AGGTGGGCCAAGCTCTTGGTCTTTATATGTATGTATATGC TACTTGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)21 |
|---|---|
| PCR product (bp) | 287 |
| fwd primer | emk04D19/U |
| fwd primer seq. | cgcaaaagtcacaatccttcaatg |
| rev primer | emk04D19/L |
| rev primer seq. | atgaagtgggccaaccttatcaaa |
| fluor. primer | emk04D19/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-agcaaaagtcacaatccttcaatg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 288 | 288 |
| EPL-1 | 286 | 286 |
| LS1151 (S.linneanum) | 275 | 275 |
| LS1934 | 284 | 284 |
| LS4021 (S. incanum) | 283 | 283 |
| Nakate Shinkuro | 284 | 284 |
| Senryo 2 | 284 | 284 |
| Shironasu | 284 | 284 |
| WCGR112-8 | 286 | 286 |
| White Egg | 286 | 286 |
| PI 286106 | 286 | 286 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_05 | 51.6 |
| ALF2 | AL05 | 50.4 |
| LW2010 | E_05 | 45.0 |
| LWA2010 | LWA_05 | 44.637 |
| LWAE2012 | E_05 | 45.821 |
| LWF2_2022 | E_05 | 47.3 |
| N28F2 | E_05 | 57.7 |
| NAF2 | NA05.1 | 15.3 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_MboI0141L10_T7_363031 Chromat_file:SL_MboI_141_L10-T7 SGN_GSS_ID:380242 (vector and quality trimmed) | 2e-08 |
| TomatoBAC_end | BLASTN | SL_EcoRI0024G05_SP6_230945 Chromat_file:SL_EcoRI_024_G05-SP6 SGN_GSS_ID:247771 (vector and quality trimmed) | 2e-08 |
| TomatoBAC_end | BLASTN | SL_EcoRI0093H12_T7_356903 Chromat_file:SL_EcoRI_093_H12-T7 SGN_GSS_ID:373729 (vector and quality trimmed) | 3e-07 |
| EST Name | Species | Strain |
|---|
