| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_05 |
| Marker Type | SSR |
| Map Position | 53.9 |
| Annotation | |
| Source Name | emi02K11 |
| Source Type | genomic |
| Source Sequence | CTAATGTAATTTCATATTGTCTCTCCTATACTGTTTACTT TAGCCTGTTTTACATACAGTACACTTCACGTACTAATGCC CCTTTGGTAGCCTGTTTTACATACAGTACACTTCACGTAC TAATGCCCCTTTGGTGCTGTATCATTTTATGATGCAGATT CAGTAGACAGAGCACTTCAACAGGCAAATCGTTGAGGTTA AGAGATTTCCTGATTTCCAGATAGTGGTGAGTCCTTCCCT GCATTCAAGGATGTTTTCTTATTTTCAGATGTTCACGTTA TTTCTTTTGAGTTGTGGTAGCCACGACCTGTCATGGTACC TTCTTAGACAGTAGTTATAGAGGCTTCATAGGCACAAATA GATGATGGGACTCTTTCCCCTTTCTCTATTTTTAAACTGT GTCCTTTTGTTAATCTTGTTCCATGTAATAGATAGAATTG ATGAGTCTTGTAGCCCACTGATAACTTAGATTATTCTTTA ATATCTTCTGCTAATCAACTGATTGAATGAATGTGATGAG ACTAGGTGGTTCACTTGGGGGCTAGCAATAGTCTTCGAGT GCCAATTATGCCTAGGGTACCCTCTCGGGGCATTACATAC TCTTTTCGAAATGAGACAATACCTTCTTAAGATTTTCTGG CTCTCTATCATCACTAGTGGGAACATACTTTAAAAAAAGG TATTTAAATAACTCTATCGTTATCTTTTCTAATCTCTACA GAGGTTGATAAAGCCTGTTAGAGCCCATCTATACACACAT ACATACACACACACACACACACACACACATATATATTACA CTCACAACTATAGAGTACATGGCCAACGTTTGAAATATAA TAGACATTCATCAAAACAGAAGGTGAGTGCTGAATGTCCA TAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)3atacat(ac)12a(ta)3 |
|---|---|
| PCR product (bp) | 299 |
| fwd primer | emi02K11/U |
| fwd primer seq. | gggggctagcaatagtcttcgagt |
| rev primer | emi02K11/L |
| rev primer seq. | tttcaaacgttggccatgtactct |
| fluor. primer | emi02K11/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-aggggctagcaatagtcttcgagt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 299 | 299 |
| EPL-1 | 299 | 299 |
| LS1151 (S.linneanum) | 291 | 291 |
| LS1934 | 297 | 297 |
| LS4021 (S. incanum) | 313 | 313 |
| Nakate Shinkuro | 297 | 297 |
| Senryo 2 | 297 | 297 |
| Shironasu | 297 | 297 |
| WCGR112-8 | 297 | 297 |
| White Egg | 297 | 297 |
| PI 286106 | 300 | 300 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_05 | 53.9 |
| ALF2 | AL05 | 53.4 |
| EW2009 | LG14 | 13.3 |
| LWA2010 | LWA_05 | 46.072 |
| LWAE2012 | E_05 | 48.736 |
| N28F2 | E_05 | 63.6 |
| NAF2 | NA05.1 | 16.5 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
