| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_05 |
| Marker Type | SSR |
| Map Position | 78.1 |
| Annotation | |
| Source Name | emi02E15 |
| Source Type | genomic |
| Source Sequence | CTTTGACAGACACAGTTTTATAGATGGATGCAACTATATA ACTACGAATTTATCTAAACCTAATACATTTAAACGATAGA TAAATTTAGTTGTAAAAACTCATTGAATTACAAGAAATAG TATGTCTAAACTCATAATATTAAAAATAAAATAGATTCAA TACTACAAAATTTGAAAAATTGAAACCATAAAAACTTAAA TCATGGAGCCACCTTTGATTTTACCTAATTTTATGACGGT GGAAAAGGAGTTGGTACCATCTGAAATTAATCGAAGTTTC AAATATCTCTCTCCCCCTCTCTCTCTCACACACACAAAAC TTAAATCATGGAGCCATCTTTGATTTTATCCTAATTCTAT GACTACAGAAAAGTAGTTGGTACGATTTGAAATTAATCGA AGTTCCAATCACTCACTCACACACACAAAAAACTTAAATC ATGGAGCCACCTTTGATTTTACCCTAATGTCGAAGTTTCA ATCACGTATACACACACAAAACTTAAATCATCAAGCCGCC TTTAATTTTATCCTAATTTTATGACGATGAAAAAAGTAAT TGGTACCATCTGAAATTAATCGAAGTTCCAATCACACACA ATATGTAAACAAACCTATATATTGTAGAGCTTCTTATCGC TGTAGTTGAACAAGAACACTGGCAAACCAGGATTTACATT TTTCACATATGAAATGTGTTGGCCAGGCAAACCTGTCAAA AAATTTTAAATGTATATAATTGAGTAACAACAACCCATCA TCCTGATTTCTTTTTATTGAAGGACAATATATTAGGGCCG AACAACTGACCTACTAGTTGCTTCTCGAGACACTCTCTGA TTGTAGCATTTGTGCAGCCAAATATAACACCGCCTAGTTG ATCTCTTGGCAGATTTCTAAAAGTTCGAGCATATCTTGCC TGGAATGGTGATGCTGGTGCTGAATTACTATGTGTGAACG TGTATGTTCTTTTCTTTTCCCACATCCTGAAAAAAAATCC ATATGGACAAAACGAAATCATCATGAATTGTAAAAGAAAA ACAGAACTAAAGAGCCATAAAAGAACTAAACTGAACTATA AGCAAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)4cccc(tc)5(ac)4 |
|---|---|
| PCR product (bp) | 289 |
| fwd primer | emi02E15/U |
| fwd primer seq. | tatgacggtggaaaaggagttggt |
| rev primer | emi02E15/L |
| rev primer seq. | ggcggcttgatgatttaagttttg |
| fluor. primer | emi02E15/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-attgacggtggaaaaggagttggt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 290 | 290 |
| EPL-1 | 290 | 290 |
| LS1151 (S.linneanum) | 290 | 290 |
| LS1934 | 289 | 289 |
| LS4021 (S. incanum) | 290 | 290 |
| Nakate Shinkuro | 290 | 290 |
| Senryo 2 | 290 | 290 |
| Shironasu | 289 | 289 |
| WCGR112-8 | 289 | 289 |
| White Egg | 289 | 289 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_05 | 78.1 |
| ALF2 | AL05 | 108.9 |
| EW2009 | LG12 | 16.7 |
| LWA2010 | LWA_05 | 75.743 |
| LWAE2012 | E_05 | 72.01 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0015P03_T7_130122 Chromat_file:LE_HBa_015_P03-T7 SGN_GSS_ID:146953 (vector and quality trimmed) | 3e-09 |
| EST Name | Species | Strain |
|---|
