| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_05 |
| Marker Type | SSR |
| Map Position | 52.2 |
| Annotation | |
| Source Name | emh11F10 |
| Source Type | genomic |
| Source Sequence | ACAAAGCTCCTTCCAAAGGAACATTGCTTTGAAACTTCAT TTTCCTTCTATAATCTTCTTCCCTCCATTTCTCATTCACA CCAACTTAGCTAGCTTTAATCAATAACTAGCTTTAACAAT AACTCTCTAAATAAAACCCTTAAAAATGTTTATACTATGT TTTCTTTTGTGATTTGGAAGCTACTCTCTCTCTCTCTCTC TCACTCTCTCTCTCTCTCTCTCTTTCTAATTCCTAGTTTT TTTACTCTCTTTCTCGTATCTCTTTTTGATGTCCCTTGAT CGATTCTCAATAGCCTTCATTTATAGCAGAAATTTAAGTT TTAAAATCCATATTTGAAACCCCAAAAATAAGTGAGAACC TTTGTACCTTAATTGCCATGCTCAGGAGGTGGCAGGCCTG TGAAACCTTATTGGGGGTTTGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)9ac(tc)9tttctaattcctagttttttta(ct)3 |
|---|---|
| PCR product (bp) | 232 |
| fwd primer | emh11F10/U |
| fwd primer seq. | ttccctccatttctcattcacacc |
| rev primer | emh11F10/L |
| rev primer seq. | ttgagaatcgatcaagggacatca |
| fluor. primer | emh11F10/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-atccctccatttctcattcacacc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 238 | 238 |
| EPL-1 | 236 | 236 |
| LS1151 (S.linneanum) | 236 | 236 |
| LS1934 | 236 | 236 |
| LS4021 (S. incanum) | 232 | 232 |
| Nakate Shinkuro | 236 | 236 |
| Senryo 2 | 236 | 236 |
| Shironasu | 236 | 236 |
| WCGR112-8 | 236 | 236 |
| White Egg | 236 | 236 |
| PI 286106 | 238 | 238 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_05 | 52.2 |
| ALF2 | AL05 | 50.8 |
| LWA2010 | LWA_05 | 45.019 |
| LWAE2012 | E_05 | 46.779 |
| N28F2 | E_05 | 57.7 |
| NAF2 | NA05.1 | 15.3 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
