| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_05 |
| Marker Type | SSR |
| Map Position | 42.0 |
| Annotation | |
| Source Name | emh05H12 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGCCTTGCTAG CAGAAGCCTTGTGAACAGTCCGTATTTGTTTCTTGGCATT CTTATGATAATTTGTCAAAATTTTAATTCCTATGTTTGGA AAATTTATAAGTTCCAATAATATGTAAACGTTTGCTAGAT TTTATAAGAACTTATGTTGCAATATTTTTGGAAAACTATA AAGGTCCATAACTAAAGTAAAGAGCTGAGACTATCAAAGA TGTAATTTGTGGTGAAAAGATTGGCAAGGTTTTGAGGAGG TAGGTGAATAGTCTTGGTGAAAATATAAGATTGCTTAGAG AGTAAGAGATGGATGGAGTAGTTGAGGTGATAAAAACAGT TTTGTGAGAAGAATAAGTCCAAAAATGCCTTAATATGATG CATTCAAGATAGAATAAAGTGGATCAGCAGTAAGAGATGG ATGGAGTAGTTGAGGTGATAAAAACAGTTTTGTGAGAAGA ATAAGTCCAAAATGCCTTAATATGATGCATTCAAGATAGA ATAAAGTGGGATCNNNNNAATGCCCATTTTCTTTTACAAA AACAAAAACCAAGCAGAAAATAGTGAAGAAAAGGTCACTG CTCTTAGTTTCTGCAACTTTCTTGTAGCAGTGACCAAGTA GATCTAGCCATACTTTGAAAGTTCTATCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TGTGTGTGTGTGTGTGTGTGTGTAATGAAGAAAGGATCGC TGCTCTGTAACAGTGACGAAATAAATCTAGCCATAATTTG AAGGTTTTATGTTTCTCTCCGTGTGTGTGTAATGATCAGT TCCATCCACATTTGGAACATAGAGATTAAGCAATTACATG TTTCCTTGTTTCTTCATTGGTTACAAGAACCCTTCAGTAT TTGCCCAAAAGAGGAAGCATTACTGCAATTTATGCATGCT TAAAGNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)27(tg)11 |
|---|---|
| PCR product (bp) | 175 |
| fwd primer | emh05H12/U |
| fwd primer seq. | ggtcactgctcttagtttctgcaa |
| rev primer | emh05H12/L |
| rev primer seq. | cagagcagcgatcctttcttcatt |
| fluor. primer | emh05H12/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-agtcactgctcttagtttctgcaa |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 203 | 203 |
| EPL-1 | 188 | 188 |
| LS1151 (S.linneanum) | 153 | 153 |
| LS1934 | 149 | 149 |
| LS4021 (S. incanum) | 186 | 186 |
| Nakate Shinkuro | 188 | 188 |
| Senryo 2 | 188 | 188 |
| Shironasu | 149 | 149 |
| WCGR112-8 | 202 | 202 |
| White Egg | 202 | 202 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_05 | 42.0 |
| ALF2 | AL05 | 72.3 |
| EW2009 | LG14 | 0.0 |
| LWA2010 | LWA_05 | 55.388 |
| LWAE2012 | E_05 | 37.975 |
| NAF2 | NA05.1 | 6.5 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0072H05_SP6_308754 Chromat_file:SL_EcoRI_072_H05-SP6 SGN_GSS_ID:325580 (vector and quality trimmed) | 3e-18 |
| TomatoBAC_end | BLASTN | SL_EcoRI0062K10_SP6_337005 Chromat_file:SL_EcoRI_062_K10-SP6 SGN_GSS_ID:353831 (vector and quality trimmed) | 4e-11 |
| EST Name | Species | Strain |
|---|
