| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_05 |
| Marker Type | SSR |
| Map Position | 51.5 |
| Annotation | |
| Source Name | emg21I10 |
| Source Type | genomic |
| Source Sequence | TATTCAATTGCTTCTATTGCTCAGTTTAGACCAAATGAAG TCATTGCACAAAACAGTTGCACTTGCGTTAACTATCCTTG TTTCTTGCAGGGACTTGAAGTCAGGCAGTACAATCTACTA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA AAGAGAGAGAGAATCCCTCCTCCATATATAATCAATTGTT TTACTTGTTTTAGATATCATTTTCTGGATGTTCTTATCTA GAAGAAACCACTAGCAAAACCAAAGAGACCAAGGTAACAT GAAGGAAAATTACAGCTACATCATACGAATACTGATAATA TTCTTCCATTAAGTTATAAAATATTCAGTAAATTGAAAGC CCAAAGTGACGTACTCTGCCCCAATTTACCTTAAAGACAT TGATTTATAGTCACATAAATATCTATAGATTGTTTCTACC ACAAGTTTCAAATGTCTTCCAAACATTGTTTAACACCATG CCCAGTCAGACGCCGTGCCATAAATTGGGACAGAGGGAGT ATGTTTAACTAGGATGAAGA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)20aa(ag)5aatccctcctcca(ta)3 |
|---|---|
| PCR product (bp) | 198 |
| fwd primer | emg21I10/U |
| fwd primer seq. | atccttgtttcttgcagggacttg |
| rev primer | emg21I10/L |
| rev primer seq. | tggtctctttggttttgctagtgg |
| fluor. primer | emg21I10/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-atccttgtttcttgcagggacttg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 204 | 204 |
| EPL-1 | 206 | 206 |
| LS1151 (S.linneanum) | 221 | 221 |
| LS1934 | 206 | 206 |
| LS4021 (S. incanum) | 210 | 210 |
| Nakate Shinkuro | 206 | 206 |
| Senryo 2 | 206 | 206 |
| Shironasu | 206 | 206 |
| WCGR112-8 | 202 | 202 |
| White Egg | 204 | 204 |
| PI 286106 | 207 | 207 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_05 | 51.5 |
| ALF2 | AL05 | 50.0 |
| EW2009 | LG14 | 7.4 |
| LW2010 | E_05 | 44.0 |
| LWA2010 | LWA_05 | 44.199 |
| LWAE2012 | E_05 | 45.113 |
| LWF2_2022 | E_05 | 45.0 |
| N28F2 | E_05 | 54.5 |
| NAF2 | NA05.1 | 13.6 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
