| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_05 |
| Marker Type | SSR |
| Map Position | 31.1 |
| Annotation | |
| Source Name | emg11P12 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNNNNNAATTCAAAGTTTGCTTACGTTGG AATCAAAAGTTCAATCAATATTATAAAATAATGTTATATT TTATTTCAAGGTTTCTGTCCCACATTGGATATAGTATAAA AAGTATTTACAACGACTACATACTCAATATAATCTAATTC TACATGATGCCCGAAAACGCTCAAACATCATTACTCTTAT ATTGTGCATGGTGCAGGTTGGTTCGAATTTTTTAAACACC AAATCAAACCATCGGGTTTTTTAATATATAGACCAAACCA AACCAAACCAATATATACACCCACACCCACACACACACAC ACACACATATATATATATAAATGTATAGATATGTGTATAT ATATATATATATATATATACACACACACATATATATACAT ATATAATATAGGTGCAATGTATGGGGCATATTGTGGNNNN NNNNNNNNNNNN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)3gaccaaaccaaaccaaaccaa(ta)3cacccacaccc(ac)9a(ta)6aatgtatagatatgtg(ta)11t(ac)5a(ta)4ca(ta)3 |
|---|---|
| PCR product (bp) | 280 |
| fwd primer | emg11P12/U |
| fwd primer seq. | aattctacatgatgcccgaaaacg |
| rev primer | emg11P12/L |
| rev primer seq. | cacaatatgccccatacattgcac |
| fluor. primer | emg11P12/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-atttctacatgatgcccgaaaacg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 281 | 281 |
| EPL-1 | 280 | 280 |
| LS1151 (S.linneanum) | 266 | 266 |
| LS1934 | 279 | 279 |
| LS4021 (S. incanum) | 259 | 259 |
| Nakate Shinkuro | 279 | 279 |
| Senryo 2 | 279 | 279 |
| Shironasu | 279 | 279 |
| WCGR112-8 | 279 | 279 |
| White Egg | 279 | 279 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_05 | 31.1 |
| ALF2 | AL05 | 32.0 |
| LWA2010 | LWA_05 | 33.066 |
| LWAE2012 | E_05 | 27.762 |
| NAF2 | NA05.1 | 0.0 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
