| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_05 |
| Marker Type | SSR |
| Map Position | 52.7 |
| Annotation | |
| Source Name | emg11K11 |
| Source Type | genomic |
| Source Sequence | CCTCCCTTATTCCTCATTTTAAAGCTTTTTCGAGTGCTTT GTTTTCCTCTTTTCAGTTGTGTCTCATGTTCGAACTCAAT TTGCTATTCTTTTCAATTTAAGGCAACTTTTCTTTCTTTT TTCTCTCACCCAACACATAATTTCCTCTTCTTCCTTTCTT TCCCCACTAATCACCTCATTTTCATTACTTTACCACAACA TAGGCCTGGTTCGAGTGACATTGGTAATTTGGGCTATGCT TCTTTAACTGTCTGGAACATGAGGACTTGGAAAGCTATGG TATGTGATTATATTGGGTCCCATTGTATCCAAGTACTCAA TTTACAAGAACATTTCTTTTCCTTTCTGCATGAGGATTCT CAAACCTAACTCTCTTCAAACTTTATTGAAGACAGTCCTT CCTCTTGGTGAAGATCCACCTCCAATTACTTCAGTATGCT TCAATCACAATGGAAAACTTTTAGCAGCTGCAGCTTCTGA TGGAATGATACACATGTTTGGTATCCTTGTCTGAACTAGT GAACACAGTCTGTAGCCGTCCTCTCTTGTACCTTGCATTA GAAACTTTTACATTTTTTCCCGTATTCTATGTCTATTTTT TTTATACGAAGGTTTCCCAGAAACAGCCTCTCTACCTCTA TGAGGTAGTGGTAAGGTCTGCATACATTTTATCCTCCCCA GACCCCACTTGTGGGATTCCACTGGGTATGTTGTTATTGT TGTATTCTATGTCTATTTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGGTTGT GAGTAATGGGATTTCAGAGTGAATCTGTGCAGTTAGGAGA TGCTCTCATAACTTTGCTGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)27 |
|---|---|
| PCR product (bp) | 299 |
| fwd primer | emg11K11/U |
| fwd primer seq. | tagccgtcctctcttgtaccttgc |
| rev primer | emg11K11/L |
| rev primer seq. | tgcacagattcactctgaaatccc |
| fluor. primer | emg11K11/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-atgccgtcctctcttgtaccttgc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 304 | 304 |
| EPL-1 | 301 | 301 |
| LS1151 (S.linneanum) | 291 | 291 |
| LS1934 | 301 | 301 |
| LS4021 (S. incanum) | 292 | 292 |
| Nakate Shinkuro | 301 | 301 |
| Senryo 2 | 301 | 301 |
| Shironasu | 295 | 295 |
| WCGR112-8 | 301 | 301 |
| White Egg | 301 | 301 |
| PI 286106 | 299 | 299 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_05 | 52.7 |
| ALF2 | AL05 | 51.5 |
| LWA2010 | LWA_05 | 45.398 |
| LWAE2012 | E_05 | 47.172 |
| N28F2 | E_05 | 60.4 |
| NAF2 | NA05.1 | 15.9 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0025K05_T7_235762 Chromat_file:SL_EcoRI_025_K05-T7 SGN_GSS_ID:252588 (vector and quality trimmed) | 4e-23 |
| TomatoBAC_end | BLASTN | LE_HBa0216N07_T7_391516 Chromat_file:LE_HBa_216_N07-T7 SGN_GSS_ID:408710 (vector and quality trimmed) | 1e-20 |
| TomatoBAC_end | BLASTN | LE_HBa0022I06_T7_133632 Chromat_file:LE_HBa_022_I06-T7 SGN_GSS_ID:150463 (vector and quality trimmed) | 9e-18 |
| TomatoBAC_end | BLASTN | LE_HBa0033O09_T7_7217 Chromat_file:LE_HBa_033_O09-T7 SGN_GSS_ID:7217 (vector and quality trimmed) | 9e-18 |
| TomatoBAC_end | BLASTN | SL_MboI0081L06_T7_226434 Chromat_file:SL_MboI_81_L06-T7 SGN_GSS_ID:243260 (vector and quality trimmed) | 1e-16 |
| EST Name | Species | Strain |
|---|
