| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_05 |
| Marker Type | SSR |
| Map Position | 52.7 |
| Annotation | |
| Source Name | emf01A06 |
| Source Type | genomic |
| Source Sequence | CTCCTTGTGATAATTGAGATCACCTGGATGTAAGACAAAA AACTAACAGACTTACAAAAATTTCCACATGCCTTCTGACA AGGGTGCGATTGGATTGTGGTAGTAGTCATTTCCAAGCTG AAAATATGAGAAAGGAAGAATGAGGTGAAAAATAACAGTG TTGGTAAGGCAAAAGTGTAGAAATATGCAATGTCAAGAAG GGCCTTTAATCACTACGTTCTTTTAGTCACTATGTTCCTA AAACATCATACGAAAGCCCTTAAGCCTACGTTATAATCCA ATAAAATCCTAAAGTGATCTTAGTCCAAGTTGTCAAAGGT CATAATCATGAGTACAGAGACAAGCATATGGTATTGCACA TGGTTTTTGAATGTCTTTTATGAGAAAGAAAGAGAGAGAG AGAGAGAGAGAGAGATTTTACATTGTCTCAAGCATTGAAA TTGAAAACATCATCATGAGAGGGATATGAGGCTTCTTTCT GAGAGGGCACTTGCATTATATTGGACTAACTCAGTGATTG TTGCTTGTTGATAATTTTCTTGCTTGTCATAGTTGTATTG TCACATATGTTGATCTGTGTTGGTTTACTTGATAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)12 |
|---|---|
| PCR product (bp) | 250 |
| fwd primer | emf01A06/U |
| fwd primer seq. | acatcatacgaaagcccttaagcc |
| rev primer | emf01A06/L |
| rev primer seq. | aagtgccctctcagaaagaagcct |
| fluor. primer | emf01A06/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-acatcatacgaaagcccttaagcc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 254 | 254 |
| EPL-1 | 253 | 253 |
| LS1151 (S.linneanum) | 268 | 268 |
| LS1934 | 253 | 253 |
| LS4021 (S. incanum) | 254 | 254 |
| Nakate Shinkuro | 252 | 252 |
| Senryo 2 | 253 | 253 |
| Shironasu | 253 | 253 |
| WCGR112-8 | 255 | 255 |
| White Egg | 255 | 255 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_05 | 52.7 |
| ALF2 | AL05 | 52.3 |
| EW2009 | LG14 | 10.1 |
| LW2010 | E_05 | 46.0 |
| LWA2010 | LWA_05 | 45.41 |
| LWAE2012 | E_05 | 46.762 |
| LWF2_2022 | E_05 | 50.2 |
| NAF2 | NA05.1 | 15.9 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
