| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_05 |
| Marker Type | SSR |
| Map Position | 54.0 |
| Annotation | |
| Source Name | eme36B08 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNCCCTGTCCCATCTTCTGATTCATTTTG TGTAGTTAGAGGTCTGTGGACACCTGTGCGTATGGGCTGG GACAGTTTGTATAACTATATATATATGATATGTATATTGG GCGGTTTAACCATAGCGATAACCTTGTCGGCCCGTATGAA TATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTATGTGTGCTGTTGGCTGGGACTTTTCTAGAT GTAGGGGTCGGATAGTCTATNNNNNGGGGGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)7(tg)17ta(tg)3 |
|---|---|
| PCR product (bp) | 228 |
| fwd primer | eme36B08/U |
| fwd primer seq. | ccctgtcccatcttctgattcatt |
| rev primer | eme36B08/L |
| rev primer seq. | catctagaaaagtcccagccaaca |
| fluor. primer | eme36B08/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-acctgtcccatcttctgattcatt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 230 | 230 |
| EPL-1 | 235 | 235 |
| LS1151 (S.linneanum) | ||
| LS1934 | 235 | 235 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 230 | 230 |
| Senryo 2 | 230 | 235 |
| Shironasu | 236 | 236 |
| WCGR112-8 | 239 | 239 |
| White Egg | 237 | 237 |
| PI 286106 | 236 | 236 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_05 | 54.0 |
| EW2009 | LG14 | 12.8 |
| LW2010 | E_05 | 48.5 |
| LWA2010 | LWA_05 | 46.934 |
| LWAE2012 | E_05 | 48.604 |
| LWF2_2022 | E_05 | 53.0 |
| N28F2 | E_05 | 63.1 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
