| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_05 |
| Marker Type | SSR |
| Map Position | 53.0 |
| Annotation | |
| Source Name | eme30D06 |
| Source Type | genomic |
| Source Sequence | AACAACAATGCCGAGTGCTTTACACCTCGAAAGGTCAAAT CGATTGAAACTAAAACAGTGATAACTCATATTGAAGCATA TTACAACAATCGAAAGAGAACGAGTACAAGAAAAACATCG CAAATTGAAAGAAACTAAAACAGAACTTATTGAAAACATA CCTCGAAGAATGATTGTTCAGAGAAACTTTGAAAGATTTT GCAGAACAGAGAAAGCGGCGCTAGGGTTTCCTTCATCCTC TTGCAGAACAGAGAAACGCTGAAGCGAAAGTGGCGCTAAG GTTTTGGTATGGTGAATTATGAGGTGGAAGAGTTTATTAA AAAAAAAATTCAGTCCACAAAGATGCAAGTATAGTATATT TGGTCCCTAAACTTTTGGGTGTGTATATATATATATATAT GTGTGTGTGTGTGTGTGTGTATATATATGTGTATATATGT ATATAAATGTGTATATATATGTATATATGTGTGTATATAT ATGTATATATGTGTGTATATATAATGTCGGATTGGTTTGG TTCGGGTTGGTTTTTTTAAAATTTAAACCAAACCAACCCA AATATAGTCGGGTTTTTTTCGTCAACACCAAACCAAACCA AACCATTAGTCGGGTTTTTTTGTCGGGTTGGTTCGGTTTG CGGTTTGGTTCGGATTTCGGTTTGGTTTTGCTCACCCCTA GCAGTTACACATGGAATTGTAAAAAAGC |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (gt)3a(ta)7(tg)10(ta)4tgtg(ta)3tg(ta)3aatgtg(ta)4tg(ta)3(tg)3(ta)4tg(ta)3(tg)3(ta)4 |
|---|---|
| PCR product (bp) | 299 |
| fwd primer | eme30D06/U |
| fwd primer seq. | gcgctaaggttttggtatggtgaa |
| rev primer | eme30D06/L |
| rev primer seq. | ccgactatatttgggttggtttgg |
| fluor. primer | eme30D06/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-acgctaaggttttggtatggtgaa |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 305 | 305 |
| EPL-1 | 308 | 308 |
| LS1151 (S.linneanum) | 304 | 304 |
| LS1934 | 307 | 307 |
| LS4021 (S. incanum) | 308 | 308 |
| Nakate Shinkuro | 307 | 307 |
| Senryo 2 | 307 | 307 |
| Shironasu | 307 | 307 |
| WCGR112-8 | 305 | 305 |
| White Egg | 305 | 305 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_05 | 53.0 |
| LWA2010 | LWA_05 | 45.577 |
| LWAE2012 | E_05 | 47.475 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_MboI0113P11_T7_196954 Chromat_file:SL_MboI_113_P11-T7 SGN_GSS_ID:213780 (vector and quality trimmed) | 7e-06 |
| EST Name | Species | Strain |
|---|
