| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_05 |
| Marker Type | SSR |
| Map Position | 100.0 |
| Annotation | |
| Source Name | eme03F04 |
| Source Type | genomic |
| Source Sequence | CCTGACTTTATAAGTTTGGTTTCCCATGCAGATTATGTGA TCTTGTTGGTTTTGGTGTTGCAATTGCCACTGGTGGGCAA TTTGTGATGAATTTCCCAGAGAGAACTTACAAATCAATGT TGATACCACTAATGCAAGAAGATAAAAGATCTGGTATGAT TCCTATAATTATGCAATGCCAGTCAGATTATTTAGTGAAA AATGCAAAATATGAAACATTTGTGAATGAACATTTGATAC ATTTCCTGTAGGTGAAACTACTCGGAGAGGGTTTTATGTG TATGACGACAGACGTAAAGCGACCCCAGATCCAGAAATAA AGAAATATATTGAGAAGGCAAGAGAGATGTCTGGTGTTAC CATCGACCCCAAGGTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCT TGTGGTTGACGAATACTACTCTTGGGATTCTTTTCAGAAA TTCTACCCTGCTCTTACTCAATTGTTTTGAACTCGACACA GATGGCAAAACTCTGGGACCATGAT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)31 |
|---|---|
| PCR product (bp) | |
| fwd primer | eme03F04/U |
| fwd primer seq. | tatgacgacagacgtaaagcgacc |
| rev primer | eme03F04/L |
| rev primer seq. | cagagttttgccatctgtgtcgag |
| fluor. primer | eme03F04/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-ATATGACGACAGACGTAAAGCGACC |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 260 | 260 |
| EPL-1 | ||
| LS1151 (S.linneanum) | 215 | 215 |
| LS1934 | 256 | 256 |
| LS4021 (S. incanum) | 215 | 215 |
| Nakate Shinkuro | 258 | 258 |
| Senryo 2 | 259 | 259 |
| Shironasu | 257 | 257 |
| WCGR112-8 | 260 | 260 |
| White Egg | 261 | 261 |
| PI 286106 | 265 | 265 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_05 | 100.0 |
| EW2009 | LG12 | 0.0 |
| LW2010 | E_05 | 100.6 |
| LWA2010 | LWA_05 | 97.51 |
| LWAE2012 | E_05 | 97.044 |
| LWF2_2022 | E_05 | 118.3 |
| N28F2 | E_05 | 123.7 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0116G01_T7_253352 Chromat_file:LE_HBa_116_G01-T7 SGN_GSS_ID:270178 (vector and quality trimmed) | 5e-06 |
| TomatoBAC_end | BLASTN | LE_HBa0179J20_SP6_125410 Chromat_file:LE_HBa_179_J20-SP6 SGN_GSS_ID:142765 (vector and quality trimmed) | 5e-06 |
| EST Name | Species | Strain |
|---|
