| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_05 |
| Marker Type | SSR |
| Map Position | 53.9 |
| Annotation | |
| Source Name | OVL01O15W |
| Source Type | EST |
| Source Sequence | GGGGGAACCCTACTAAATCTGTTTGATTTTCCTCAAATTT CAAACTTTTTAAGGCAATTTCAAGAACAAGATTCCTTTTT TGAGGGTTATGAGTCATCCAGTCGCCAGAAGCTTCCTGTT CACGACACTTCTTATTCAAGGCATGTCGTCAATCAGTATG TGGAGGAGGTGGAGGATGATGACAACGAAGAAGAAGAAGA AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAT GATGATGATGACGATGGCGATGAAAATGGTGTTCAGCGGA TAGGGAAAGATGTGTTTGAGGATGAGGATGATGATGATGA GTATGGTGATTCGCAGAGACATCAAAAGAAGAGGAAGTTA AAGAGCTTGTTATCAAGTTATGAGTTAGCACCTCGAGTAC CACCACCATCTACTACAGCTGCAACTGCTCCCAAGCCTAC ATTTGGTGGTAGGAATCCACTTTCTGACTGNNNNNCCATT CCTTTCATGTTGGGTATTTTTCATTGTTGTATTATAACTT GCATGTTAGTTTTTCCCTGGGGATGGCAATATACAAGACA ACTAAATGTGATGTAAGAATGTTTTTGAATGTAGTTTCAG CAGGCAATAATAACATAATGGGGAACCCAATTTCAGGAAA AAAAAAAAAAAAAAAAAAAAAAAAAGTAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (gaa)16(gat)5 |
|---|---|
| PCR product (bp) | 277 |
| fwd primer | ecm040/U |
| fwd primer seq. | tatgtggaggaggtggaggatgat |
| rev primer | ecm040/L |
| rev primer seq. | tgggagcagttgcagctgtagtag |
| fluor. primer | ecm040/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-attgtggaggaggtggaggatgat |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 277 | 277 |
| EPL-1 | 280 | 280 |
| LS1151 (S.linneanum) | 309 | 309 |
| LS1934 | 280 | 280 |
| LS4021 (S. incanum) | 297 | 297 |
| Nakate Shinkuro | 286 | 286 |
| Senryo 2 | 280 | 286 |
| Shironasu | 280 | 280 |
| WCGR112-8 | 280 | 280 |
| White Egg | 283 | 283 |
| PI 286106 | 279 | 279 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_05 | 53.9 |
| LWA2010 | LWA_05 | 46.327 |
| LWAE2012 | E_05 | 48.363 |
| N28F2 | E_05 | 62.6 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
