| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_04 |
| Marker Type | SSR |
| Map Position | 10.6 |
| Annotation | |
| Source Name | emk02D15 |
| Source Type | genomic |
| Source Sequence | ACAATAAGCAACACAAAAATGAGAGTGGTCATACTGAACA AGCTTTTGAAGAACCACAGAGTAAGAAAAAAGATGTTGGC AATTCTGCCAGCAGAGAAGACACCAAACAAGCCCCTGTGC AAGGTATATATATATTTTATATTGTTCTTATATGATTATA ATACATTTTTTAAGTTGTCAAGTCTGTGTCTAATACTACA ATCTTATATATATTTTTTTCACACACACACACACACACGC ACACACATATATTATAATACATTTTAGCTGCCAAGTTTGC CAAATTAATACGATTATAATACATTTTTTTTTTTGTGTTT GTTACTGTAAATTTAATTTTGACTGCCAAATCTGTATCAG ATAGTTCATTGTTGAGTAAGGATGATGCGAAAGTTATAGT TACATCTGTATTAAATGATATTAGAGATGGTGGTAAAGCA GGTATTTTATCACCATATTAAAATACCTATACAATACAAT GTATGTAACACATTCTATTTAAGGGTGAATATATTTTTTG TCATACCAGATGTGAGTATACGGGATGTGAACAAGGGGAA AGCTCCTATTGAATTTGATGATGATGTAGGTTTTAAATAA AATCCATGAATAATTGATTTATTGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)4tttttttc(ac)9gc(ac)3(at)3 |
|---|---|
| PCR product (bp) | 193 |
| fwd primer | emk02D15/U |
| fwd primer seq. | agcagagaagacaccaaacaagcc |
| rev primer | emk02D15/L |
| rev primer seq. | tggcaaacttggcagctaaaatgt |
| fluor. primer | emk02D15/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-agcagagaagacaccaaacaagcc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 196 | 196 |
| EPL-1 | 196 | 196 |
| LS1151 (S.linneanum) | 187 | 187 |
| LS1934 | 194 | 194 |
| LS4021 (S. incanum) | 190 | 190 |
| Nakate Shinkuro | 196 | 196 |
| Senryo 2 | 196 | 196 |
| Shironasu | 196 | 196 |
| WCGR112-8 | 194 | 194 |
| White Egg | 196 | 196 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_04 | 10.6 |
| EW2009 | LG05 | 42.8 |
| LWA2010 | LWA_04 | 45.154 |
| LWAE2012 | E_04 | 40.984 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
