| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_04 |
| Marker Type | SSR |
| Map Position | 7.9 |
| Annotation | |
| Source Name | emi02I08 |
| Source Type | genomic |
| Source Sequence | CTTCTTATCGTTCCACGATATTAACTTAGGTGCTTCTTGG GAGGCAAACCAAGGTATACCCCTTGCACCTTTTCTTTGTG TTGTTACTATGAGAACAAAGTATCCTATATTTGGCGGGGT GGTAGAAGTTATGGATTAAGGTGAAGTCTGAGTAGCCTCG GGTCCATAACTTCCCCTATTTTTAATCCCAAGGTTTTCTT GTCGTGCTTCTTTTTTCTTGTAGATTTTTATTTTCATGTT GAACCGGCATGTTTAGGTAGTATAGATAATGGATAAATTC ATAGTAATGTTATCATTTGGCACACACACACACACACACA CATATATATATTTCTTTAGATTTTCTTTAACCTTTTGATG CAAAAATTTGGTACCCTCAAAGTTTTTAAGGTTGTGAGTA TTGAGGCATTCATACATTTGTGAGTATCTGGCAATGTTTG TTCTGATATTGTTAAGGTAAGCTGAGTGTGAAAGCATGAC CTGTGAGTCTATACTTGATTGTGAATGCAATTGTCATGTG TGCTGTGAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)10a(ta)4 |
|---|---|
| PCR product (bp) | 297 |
| fwd primer | emi02I08/U |
| fwd primer seq. | ccaaggttttcttgtcgtgcttct |
| rev primer | emi02I08/L |
| rev primer seq. | acaggtcatgctttcacactcagc |
| fluor. primer | emi02I08/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-acaaggttttcttgtcgtgcttct |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 302 | 302 |
| EPL-1 | 302 | 302 |
| LS1151 (S.linneanum) | 250 | 250 |
| LS1934 | 300 | 300 |
| LS4021 (S. incanum) | 300 | 300 |
| Nakate Shinkuro | 302 | 302 |
| Senryo 2 | 302 | 302 |
| Shironasu | 302 | 302 |
| WCGR112-8 | 302 | 302 |
| White Egg | 302 | 302 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_04 | 7.9 |
| LW2010 | E_04 | 42.2 |
| LWA2010 | LWA_04 | 43.505 |
| LWAE2012 | E_04 | 42.982 |
| LWF2_2022 | E_04 | 62.7 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0034A12_SP6_7318 Chromat_file:LE_HBa_034_A12-SP6 SGN_GSS_ID:7318 (vector and quality trimmed) | 5e-06 |
| EST Name | Species | Strain |
|---|
