| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_04 |
| Marker Type | SSR |
| Map Position | 13.3 |
| Annotation | |
| Source Name | emh11I06 |
| Source Type | genomic |
| Source Sequence | ACCTCCATCGAGATGAATGATTCCTTTTGCATCTTGGACT ATGGCTGGGATGGATGACTCCTTCTTAGACTGTTTCGAGT TCATTTCTATACATGACCACTAGATCTTCTGACTCTTTCT GAATAAAGATGACCTCCTCCATATTGTCAAAGACATTAGT GTCTGTTTTGTGAGGTCTGCAGTTAATAAACTTCTCAACC TTAATTGCAGCATGTCCGACCACCCTGTATTGAATGCCAT TGATTACCAATCTCCTCCTTCCTTGAATTCGGATGATAGT AATGTGATGTCCATGCTTGTTAAAGTTTCTCACACAAAAA GAACTCTAAAGAGTGATCATAGAGTTACTCTTCACTTTCG ATGCCTTCCTTTAGAGATGCACATATCTAGAGCATTGTCT TCCCGTTGAAAGAAGTTTGTTGATTAAGTTCCGCCCTCGT TCTGTCCATTCAAACCGTTCCTCTGCTCTTGCTACACTTC TGCTAATATTACACAACGTGTAAGCCAAAACAAAGTATAT TGTATCTTTTATCTCACTAACGCTGGAAAGAGATAGAGGG GGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAAGAAAAGGAAGAAGATTTCAACAGAAAACACAG TGGATGAAATCTGAGCTACCAAGCAACTTGGTGGCTGGCA AAAGCGTCGGAGAAGGCTGATCTACAATCCTAAGATGTAG GAAAGAGGAGCCTTGATGATTGTGCCTGGGAATATTTTTG ATACGTTACAAGTCAAAGAAAATTGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)21 |
|---|---|
| PCR product (bp) | 299 |
| fwd primer | emh11I06/U |
| fwd primer seq. | cattcaaaccgttcctctgctctt |
| rev primer | emh11I06/L |
| rev primer seq. | gcacaatcatcaaggctcctcttt |
| fluor. primer | emh11I06/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-atttcaaaccgttcctctgctctt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 303 | 303 |
| EPL-1 | 301 | 301 |
| LS1151 (S.linneanum) | 274 | 274 |
| LS1934 | 301 | 301 |
| LS4021 (S. incanum) | 268 | 268 |
| Nakate Shinkuro | 301 | 301 |
| Senryo 2 | 301 | 301 |
| Shironasu | 301 | 301 |
| WCGR112-8 | 289 | 289 |
| White Egg | 301 | 301 |
| PI 286106 | 289 | 289 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_04 | 13.3 |
| ALF2 | AL04 | 52.0 |
| EW2009 | LG05 | 45.0 |
| LW2010 | E_04 | 45.3 |
| LWA2010 | LWA_04 | 47.468 |
| LWAE2012 | E_04 | 46.53 |
| LWF2_2022 | E_04 | 66.1 |
| N28F2 | E_04 | 54.8 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
