| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_04 |
| Marker Type | SSR |
| Map Position | 37.3 |
| Annotation | |
| Source Name | emg21C05 |
| Source Type | genomic |
| Source Sequence | TTAAGGCCTTGCTAGCAGTAAGCAATTCCAGCATAATTAA TCCCTACATTACTAATACATCCAATCCAACAACTATTCTA ATAAACCCTACCAAATGACCCCTCAATTTCAACAATTCAG ACAAGGAAGGATATATGTCTCAAACCTTGTGAAGAAAGCT CTAGCTAGACCCAACAAAGGTAGAATACGAACTTAAACGG CCATGAACATTTTATACTACAACAACAACAACAACAACAA CAACAACAACAACAACAACAACAACTACAACAACAACAAC AACATACCCAGTGAAATCCCACAAGTAGGGTCTGGGGAGG GTAGAATTTACCACTACCTAAGTAGAGAGGCTGTTTCCTG AGAACCCTTGTCTCAAAATCCATACACAGAACGGACTAGA TATGATCAAAAGTAAAAACAAGCACATGACAATACAAAAG TATAATGAGTGGAAACTAGCAAGATGGAAAAACCACCATC TGTCTTTGGGTGGTAGACTGGCTCTTATAAATTAGTCATG GATGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (caa)15cta(caa)5 |
|---|---|
| PCR product (bp) | 286 |
| fwd primer | emg21C05/U |
| fwd primer seq. | aaccctaccaaatgacccctcaat |
| rev primer | emg21C05/L |
| rev primer seq. | aagggttctcaggaaacagcctct |
| fluor. primer | emg21C05/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-atccctaccaaatgacccctcaat |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 286 | 286 |
| EPL-1 | 286 | 286 |
| LS1151 (S.linneanum) | 283 | 286 |
| LS1934 | 280 | 286 |
| LS4021 (S. incanum) | 311 | 311 |
| Nakate Shinkuro | 283 | 283 |
| Senryo 2 | 286 | 286 |
| Shironasu | 283 | 283 |
| WCGR112-8 | 286 | 286 |
| White Egg | 268 | 268 |
| PI 286106 | 287 | 287 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_04 | 37.3 |
| ALF2 | AL04 | 82.4 |
| LW2010 | E_04 | 68.3 |
| LWA2010 | LWA_04 | 70.57 |
| LWAE2012 | E_04 | 69.757 |
| LWF2_2022 | E_04 | 90.2 |
| N28F2 | E_04 | 82.1 |
| NAF2 | NA04 | 89.3 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0101F12_T7_312443 Chromat_file:SL_EcoRI_101_F12-T7 SGN_GSS_ID:329269 (vector and quality trimmed) | 2e-08 |
| TomatoBAC_end | BLASTN | LE_HBa0068C06_T7_66539 Chromat_file:LE_HBa_068_C06-T7 SGN_GSS_ID:66539 (vector and quality trimmed) | 2e-08 |
| TomatoBAC_end | BLASTN | LE_HBa0135I08_T7_61455 Chromat_file:LE_HBa_135_I08-T7 SGN_GSS_ID:61455 (vector and quality trimmed) | 3e-07 |
| TomatoBAC_end | BLASTN | SL_EcoRI0126J05_SP6_331820 Chromat_file:SL_EcoRI_126_J05-SP6 SGN_GSS_ID:348646 (vector and quality trimmed) | 1e-06 |
| TomatoBAC_end | BLASTN | SL_EcoRI0119O02_T7_326679 Chromat_file:SL_EcoRI_119_O02-T7 SGN_GSS_ID:343505 (vector and quality trimmed) | 1e-06 |
| EST Name | Species | Strain |
|---|
