| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_04 |
| Marker Type | SSR |
| Map Position | 0.4 |
| Annotation | |
| Source Name | emg01B20 |
| Source Type | genomic |
| Source Sequence | CCTGGAGTAATGTCGGTGGCTTGATGACTGAATTGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA AGCCAAAGCAACCAGATGGATAGGTTGAGCCTAGAGTGGC AAACGATGAGAGAGGAGGTTGTGAAAATGTCTCAAAAGAT TTGGCTCTAATACCATGTGAAAGAATGGGTATCCAATCCT AAACCTTGTGGCAAATTGGCAATAGATGTAGTAGTCTAGA AATCCTCCAACCTGTCGTTAACTTTAGTCTGGGTCTCATC AATCAGTATTATGTCATCTGCAAATAGCATACACCATGGT ACCTCCTTTTGGATAGGTCGCGTCAGCTCATCCATCACCA AGGCAAACAAGAAAGGGCTCAACACAGATCCTTGATGGAG TCCCATCTCAACAGAAAAATACTCTGAGTCTACTCCCACC GTTCTTACTCGAGTTTTGGCTCCATCGTACATATTCTTAA TCGCCCTGGTATACACCAAAGGGACACCTCTCATCTCTAG GCACCTCCATAAAACATCTCTCGGAACTTTGTCATATGTC TTCTTAAGGTCAATGAACACCATATGAAGATCCTTCTTTC TTTCCCTAAATTTCTCTACTAACCTCCGGACAAGATGAAT T |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)22 |
|---|---|
| PCR product (bp) | 121 |
| fwd primer | emg01B20/U |
| fwd primer seq. | gtaatgtcggtggcttgatgactg |
| rev primer | emg01B20/L |
| rev primer seq. | atcgtttgccactctaggctcaac |
| fluor. primer | |
| dye | |
| fluor. Primer seq. | |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_04 | 0.4 |
| LWA2010 | LWA_04 | 0.439 |
| LWAE2012 | E_04 | 0.437 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0184P10_T7_259014 Chromat_file:LE_HBa_184_P10-T7 SGN_GSS_ID:275840 (vector and quality trimmed) | 6e-09 |
| TomatoBAC_end | BLASTN | SL_MboI0116G10_SP6_206887 Chromat_file:SL_MboI_116_G10-SP6 SGN_GSS_ID:223713 (vector and quality trimmed) | 2e-08 |
| TomatoBAC_end | BLASTN | LE_HBa0091O12_T7_95543 Chromat_file:LE_HBa_091_O12-T7 SGN_GSS_ID:95543 (vector and quality trimmed) | 2e-08 |
| TomatoBAC_end | BLASTN | LE_HBa0233D05_SP6_390311 Chromat_file:LE_HBa_233_D05-SP6 SGN_GSS_ID:407505 (vector and quality trimmed) | 6e-06 |
| EST Name | Species | Strain |
|---|
