| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_04 |
| Marker Type | SSR |
| Map Position | 25.3 |
| Annotation | |
| Source Name | emf21L13 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNCTTAGGGTGGTAGTTAT TCCACTCCAAAATGGTTCAGGTGGTAATAAGACCATTAAA AAAAGTAAGTGTAACTGAAAATTCGAAACAAGTCCAGGGG ATTTATGCCTTCTCCCTAAAGCAATCCTTGATTTTGAAAA CATAACAATATACACACACACACACACACATATATATAAA GATAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAAGGAGGGAGAAAGAGAGA ACACCATCTACCATGCAAAGAATTCTTCCTTAAGCCTCCT CTACATTACCAACTCCATTCCCAACAAAGATGATTGATCC TAAATCTCTGAGCCTAAAGTCATTTGGTTGGGATTCGGGA TTCCACCATCGAATGGTCCTACAATTAGTAATCTCTCGAT TCTAACAACATTGTGGAATATCTCATCTCCGAAACCTCTA CTCCAGTGCAGTCCTCCTTCACCGGCCTACCTAGTCAGGG AACAACTTACCTCTCAACTCTCTTGGACCTTGGTTGTCTG TCTGTCTGACATTAACCAGCATAATTATTACAAGAACGTG GGTTTATTAAGCGCATAATACTCGTTTGGCAACTGAAATC ACAATCCCTAACACACTGAGATAATTACACTACACCATAC AAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)9a(ta)4aagat(ag)5aa(ag)23aaggagggagaa(ag)3 |
|---|---|
| PCR product (bp) | 300 |
| fwd primer | emf21L13/U |
| fwd primer seq. | aaattcgaaacaagtccaggggat |
| rev primer | emf21L13/L |
| rev primer seq. | ccgaatcccaaccaaatgacttta |
| fluor. primer | emf21L13/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-atattcgaaacaagtccaggggat |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 300 | 300 |
| EPL-1 | 299 | 299 |
| LS1151 (S.linneanum) | 269 | 269 |
| LS1934 | 302 | 302 |
| LS4021 (S. incanum) | 263 | 263 |
| Nakate Shinkuro | 300 | 300 |
| Senryo 2 | 299 | 299 |
| Shironasu | 299 | 299 |
| WCGR112-8 | 299 | 299 |
| White Egg | 301 | 301 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_04 | 25.3 |
| ALF2 | AL04 | 70.9 |
| LW2010 | E_04 | 55.5 |
| LWA2010 | LWA_04 | 58.39 |
| LWAE2012 | E_04 | 57.563 |
| LWF2_2022 | E_04 | 79.3 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
