| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_04 |
| Marker Type | SSR |
| Map Position | 49.5 |
| Annotation | |
| Source Name | emf11N23 |
| Source Type | genomic |
| Source Sequence | NNCTGTTCTTCCCTTTTTCCCCTTTTAACTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATT TCTTGGTAAGATTTCTCTTTATCTGTTTCTCTCATTTCCT GATCTGAAACTTGTTGTGGCTTTCAAAGTTTAAATCTTTG AAGAGTTTGGGGTGTGGGGTTTTCTTCTTTCTTGGATTTG ATTGCTTTTTTGGGGTATATTTTGTTGATTTGTGGATTGG AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)24 |
|---|---|
| PCR product (bp) | 194 |
| fwd primer | emf11N23/U |
| fwd primer seq. | ctgttcttccctttttcccctttt |
| rev primer | emf11N23/L |
| rev primer seq. | tccaagaaagaagaaaaccccaca |
| fluor. primer | emf11N23/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-atgttcttccctttttcccctttt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 202 | 202 |
| EPL-1 | 206 | 206 |
| LS1151 (S.linneanum) | 186 | 186 |
| LS1934 | 185 | 187 |
| LS4021 (S. incanum) | 198 | 198 |
| Nakate Shinkuro | 200 | 200 |
| Senryo 2 | 200 | 206 |
| Shironasu | 185 | 185 |
| WCGR112-8 | 202 | 202 |
| White Egg | 204 | 204 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_04 | 49.5 |
| ALF2 | AL04 | 93.7 |
| EW2009 | LG05 | 74.5 |
| LW2010 | E_04 | 72.3 |
| LWA2010 | LWA_04 | 78.024 |
| LWAE2012 | E_04 | 75.589 |
| LWF2_2022 | E_04 | 97.6 |
| NAF2 | NA04 | 95.1 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
