| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_04 |
| Marker Type | SSR |
| Map Position | 5.4 |
| Annotation | |
| Source Name | emf01K16 |
| Source Type | genomic |
| Source Sequence | CTCCTCCTATAGTAGTGCATTTTTGAAGGATCTGACCTCA ACACGAAAACACTTTTGGAGAGTACATGCAACAGATTATC TGCTTACTTGTTCTCTTGGAAATGCATTCCATCTTCTTAA CATTCTGTAGCCCTTCATGTGTAACTATGATAACATATCA GTCAGACCCCCCACCCTCAGCCCCGCACACGCAAAGTTGT TTATTCCTTGACCAGATACAGAAATCACGGATGGGACTAC CAAATCTGGAGGTAACATTTGAAACACTTGTTGATGCTTT TGTGTTTTTGGACAAGAACAAGGATGGCTATGTAAGCAGG AATGAGATGGTTCACGCAATTAATGAAACTACATCTGGAG AAAGGTCTTCTGGTCGAATCGCAATGAGAAGATTTGGTAC TCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTG TGTGTTTGTGTTGTGTGTGTTTTATCTTATGTACAAATAT GAGAAAACTCAGGCTCTGCTTTATCTTATGTACAAATATT TCACAATTTAGGAAGATGTACCGAGTGTCTCGAATTGTGA GTGCAGCAATCTTTACGGTAGAAAGACAAGGATGATCCGA TTCGCATACTTGTTTCCAGTGGACCAGTTACTTAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)9(tg)13tttgtgt(tg)4 |
|---|---|
| PCR product (bp) | 278 |
| fwd primer | emf01K16/U |
| fwd primer seq. | ttttggacaagaacaaggatggct |
| rev primer | emf01K16/L |
| rev primer seq. | cactcacaattcgagacactcggt |
| fluor. primer | emf01K16/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-atttggacaagaacaaggatggct |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 270 | 270 |
| EPL-1 | 285 | 285 |
| LS1151 (S.linneanum) | 272 | 272 |
| LS1934 | 280 | 280 |
| LS4021 (S. incanum) | 272 | 272 |
| Nakate Shinkuro | 272 | 272 |
| Senryo 2 | 272 | 280 |
| Shironasu | 270 | 270 |
| WCGR112-8 | 271 | 271 |
| White Egg | 270 | 270 |
| PI 286106 | 270 | 270 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_04 | 5.4 |
| ALF2 | AL04 | 4.2 |
| EW2009 | LG05 | 4.4 |
| LW2010 | E_04 | 3.2 |
| LWA2010 | LWA_04 | 5.226 |
| LWAE2012 | E_04 | 4.535 |
| LWF2_2022 | E_04 | 4.1 |
| N28F2 | E_04 | 10.1 |
| NAF2 | NA04 | 5.9 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0017M12_SP6_130763 Chromat_file:LE_HBa_017_M12-SP6 SGN_GSS_ID:147594 (vector and quality trimmed) | 1e-125 |
| TomatoBAC_end | BLASTN | LE_HBa0136G16_SP6_69822 Chromat_file:LE_HBa_136_G16-SP6 SGN_GSS_ID:69822 (vector and quality trimmed) | 1e-110 |
| EST Name | Species | Strain |
|---|
