| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_04 |
| Marker Type | SSR |
| Map Position | 3.5 |
| Annotation | |
| Source Name | eme05G05 |
| Source Type | genomic |
| Source Sequence | AACATTCAAGCAACAATAAGGGGCTGCACAATCTGTTAAG GAAAGAAACGAACTGAGTTGGTGGATCTTACTTGGGAATT GACAGGAATAGAAAAACTACTATCGGCAGATTTGCCAAAA TCCGGCAAGGTCTGATGTACCCTTGGTCCAAAGGTCGTCA GGATGAGGTCGCTGGATTCTTGTTGACCGGTGGTGATAGT GCAATTAAAAAAATATAGGGAGAGAAAGGGATAAAGAAAG AGGAGCTGGGGAAATTGTCTATGGTTGCTGGTGGTTTTTG GGGGGGGGGGGAGTTGTCATCAAGGCAACGGCATGCAATG GAGAGTAGTGGAATTATTTTATCGTTGAGTGCTAGAGAAA GAGAGAACACTAGGAGAGAGAGAGAGGAGCATTAGAGTGG TAATATTTACGGCTGGAAAATCTTAAGAAATGATAAGTTG TCTTCCCAAGAAGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)3a(ac)2tag(ga)6 |
|---|---|
| PCR product (bp) | |
| fwd primer | eme05G05/U |
| fwd primer seq. | aagaaagaggagctggggaaattg |
| rev primer | eme05G05/L |
| rev primer seq. | ccttcttgggaagacaacttatca |
| fluor. primer | eme05G05/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-ACAAGAAAGAGGAGCTGGGGAAATTG |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 228 | 228 |
| EPL-1 | 228 | 228 |
| LS1151 (S.linneanum) | 227 | 227 |
| LS1934 | 230 | 230 |
| LS4021 (S. incanum) | 234 | 234 |
| Nakate Shinkuro | 229 | 229 |
| Senryo 2 | 229 | 230 |
| Shironasu | 230 | 230 |
| WCGR112-8 | 231 | 231 |
| White Egg | 227 | 227 |
| PI 286106 | 227 | 227 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_04 | 3.5 |
| EW2009 | LG05 | 2.8 |
| LW2010 | E_04 | 2.6 |
| LWA2010 | LWA_04 | 3.781 |
| LWAE2012 | E_04 | 6.603 |
| LWF2_2022 | E_04 | 5.5 |
| N28F2 | E_04 | 7.4 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0122C02_SP6_57314 Chromat_file:LE_HBa_122_C02-SP6 SGN_GSS_ID:57314 (vector and quality trimmed) | 7e-08 |
| EST Name | Species | Strain |
|---|
