| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_04 |
| Marker Type | SSR |
| Map Position | 61.0 |
| Annotation | |
| Source Name | emd13H06 |
| Source Type | genomic |
| Source Sequence | ATCTACCAAATAAACTACAAGTCACATACCAAGAAACTCT TGTGACCAGAAAGACAACAGAATACAAACTTCTCACCTTT TGATAATGAAGTTTATTACTTTAATCAACAAATGCATGAA CATATAAGAAACTTTAGTGGTTTTCCAATTACCCCCACGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGACAGAGAGAACGCTAAAAGACAATCCCTACTTTCTCT TAAATACAAGAGCAATCCATCCTAAAGAGATGTTAAGGGT GAGCAAGGAACAAAGAACAAAAGTGGAATAATCAGTATGA AATGCAGGAAACATTTAGTTTCAACTTTAACAACAACAAG AACAACAACATATCCAGTGAAATCCCACAAGTGGGGTCTG GGGAGGGTAGAATGTACGCAGACCTTACCACTACCTAAGT AGAGAGGATTAGTTTCAACTTTAACATCCACTAATAATGA GCTAAAAGAAAAAAAAGATAAGTAAACGGTCAGCTTGGCG CACTAAGCT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)22ac(ag)3 |
|---|---|
| PCR product (bp) | 284 |
| fwd primer | emd13H06/U |
| fwd primer seq. | ttagtggttttccaattaccccca |
| rev primer | emd13H06/L |
| rev primer seq. | gtacattctaccctccccagaccc |
| fluor. primer | emd13H06/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-atagtggttttccaattaccccca |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 280 | 280 |
| EPL-1 | 280 | 280 |
| LS1151 (S.linneanum) | 297 | 297 |
| LS1934 | 278 | 278 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 280 | 280 |
| Senryo 2 | 280 | 280 |
| Shironasu | 278 | 278 |
| WCGR112-8 | 284 | 284 |
| White Egg | 278 | 278 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_04 | 61.0 |
| ALF2 | AL04 | 106.0 |
| EW2009 | LG05 | 90.1 |
| LW2010 | E_04 | 87.7 |
| LWA2010 | LWA_04 | 91.521 |
| LWAE2012 | E_04 | 88.467 |
| LWF2_2022 | E_04 | 113.1 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| SGN_marker | BLASTN | TG151-F [RFLP] -- FORWARD SEQUENCE : Tomato-EXPIMP 2001 map, chr 2, offset 93.00, conf F(LOD3) : Tomato-EXPEN 1992 map, chr 2, offset 108.80, conf I(LOD2) | 2e-07 |
| TomatoBAC_end | BLASTN | SL_MboI0081L06_T7_226434 Chromat_file:SL_MboI_81_L06-T7 SGN_GSS_ID:243260 (vector and quality trimmed) | 9e-20 |
| TomatoBAC_end | BLASTN | LE_HBa0216N07_T7_391516 Chromat_file:LE_HBa_216_N07-T7 SGN_GSS_ID:408710 (vector and quality trimmed) | 4e-19 |
| TomatoBAC_end | BLASTN | LE_HBa0135I08_T7_61455 Chromat_file:LE_HBa_135_I08-T7 SGN_GSS_ID:61455 (vector and quality trimmed) | 2e-17 |
| TomatoBAC_end | BLASTN | SL_EcoRI0064C16_SP6_265337 Chromat_file:SL_EcoRI_064_C16-SP6 SGN_GSS_ID:282163 (vector and quality trimmed) | 1e-15 |
| TomatoBAC_end | BLASTN | SL_EcoRI0050M11_T7_244589 Chromat_file:SL_EcoRI_050_M11-T7 SGN_GSS_ID:261415 (vector and quality trimmed) | 1e-15 |
| EST Name | Species | Strain |
|---|
