| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_04 |
| Marker Type | SSR |
| Map Position | 7.9 |
| Annotation | |
| Source Name | emd13A05 |
| Source Type | genomic |
| Source Sequence | GAGGTGTAAATCACCCATCCGATAGTTTGACACAGTAGCA GTGGAGAGCATGGGTATTAATATGTTAGGAGATGACCTTA AGCGAGTGAGGTCGATTCAAAGTAGATTAGTGACAACGCA TAGTCACCAAAAAAGCTATGCAGATTCGATCGTTAGTTAA TAGTTTGGTGGAAGTCTCAACCTTGAAGGGTGTTATACAA TTTGATAAGAAGGGCAAGCTCAATCTGAGGTTCATTGGTT ACTTTGGAGATTCTAGACAGAGAGAGAGAGAGAGAGAGAA AGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGCTTA TAGGCTTGCTTTGCCACCCAATCTAACTTCAATTCATCTT GTGTTTCATGTTTTGATGTTGCGGCATTATATTCCGGATG AGACATGTAATTTCCATGGATTCAGTTGAGTTGAGCCCTA ATTTAGAATTATGAGGAGCATTCGATTGCCATTTTGGATA GGCAAGTGAGGAAGTTGAGGACTAAGGAGATCACTTCAGT AAAGGTCTAGTGTAGCCATAGGCT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)10aaagaa(ag)14 |
|---|---|
| PCR product (bp) | 136 |
| fwd primer | emd13A05/U |
| fwd primer seq. | ggcaagctcaatctgaggttcatt |
| rev primer | emd13A05/L |
| rev primer seq. | agttagattgggtggcaaagcaag |
| fluor. primer | emd13A05/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-agcaagctcaatctgaggttcatt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 137 | 137 |
| EPL-1 | 135 | 135 |
| LS1151 (S.linneanum) | ||
| LS1934 | 135 | 135 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 135 | 135 |
| Senryo 2 | 135 | 135 |
| Shironasu | 135 | 135 |
| WCGR112-8 | 135 | 135 |
| White Egg | 135 | 135 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_04 | 7.9 |
| LWA2010 | LWA_04 | 42.791 |
| LWAE2012 | E_04 | 42.217 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0072J22_T7_84571 Chromat_file:LE_HBa_072_J22-T7 SGN_GSS_ID:84571 (vector and quality trimmed) | 5e-06 |
| EST Name | Species | Strain |
|---|
