| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_03 |
| Marker Type | SSR |
| Map Position | 8.4 |
| Annotation | |
| Source Name | emk04A23 |
| Source Type | genomic |
| Source Sequence | ACATAAAAGGCTTCTTAGACAGAAAACTGGCCAGAACTTT CACTGTGTTTCATGCCTTTTGTTGACACCATACAAGAAGA TTCAGATTTTTCCATAAAAACAAAGGTTGTAGGTATATGA ATATGCTTTCCAAAACATATTTACACACTAACAACAAAGT TTACTACGTAGAGATATACCCCAATTACTAAGCATTGCAC AATTTCAACACAGAATTTATCTACTTACCAAAGGATAGGG CTTCTTGATTCTTTCCCAAGGGAAATGACTTTTTTCATGA TTTTGACCAAATATACAAAATGTGAGGGTATTTATAAGGT GTATGTAACTTTTTGAAACCAACCTAACTTTGGGCAACAC ACACACACACACACACACACACACACACACACACACACAC ATATATATATATATATATATATTATGTAAAAGCAACTTAA AGAGGGATGCCCAAAAGTGGCTGCCCAAGACTCCTTTTTC ATTCCTTATTTGTTTTATTCCAACATAATACTTATTATTA AAGTTTGTTTACGAACTTGGAATCACTGTTACTATTTTCT GGAGAATTCGGAAGTTATATGTCAATTTTAGAAATTTCAA AATAAGGGAATAATACTACAAGCATAATTAAGTGTAAGCT TGCAGGACTTATGATTATCTAAATATATATGTACGCTGTT GAAATAAGTCCGTAGGCACAACAAGTTGCCACTAAATTTG GTTTGGTTCCTGGTAAAGCAATTAATTTATTATAATTTTG TAATTTATTGGTGATATATCCTTGTTGTTTTTTGGCTAGT TCAGGATGCTGCATAGGTTGGTTATTTAACATATTTTGGA TTTTTTCAATGTTTTCGATATAAGATCTGGTGATATGGTT ATAGGTTTTCTTTTCTTGGTTCAAGGAATTGGTATAAGTA TGTATTTGTGGTGGTATAAATAATTCTTGTTTTTGTATGT GCGGTGGGGCATAAGGTTTTTCAAATACCTTATTCAAGTT GTAATTTTTCTTTTTTATGACTGGTGTAAATATTTCCTTG GATGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)22a(ta)10 |
|---|---|
| PCR product (bp) | 216 |
| fwd primer | emk04A23/U |
| fwd primer seq. | agggcttcttgattctttcccaag |
| rev primer | emk04A23/L |
| rev primer seq. | gggcatccctctttaagttgcttt |
| fluor. primer | emk04A23/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-agggcttcttgattctttcccaag |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 218 | 218 |
| EPL-1 | 218 | 218 |
| LS1151 (S.linneanum) | 204 | 204 |
| LS1934 | 211 | 211 |
| LS4021 (S. incanum) | 215 | 215 |
| Nakate Shinkuro | 218 | 218 |
| Senryo 2 | 218 | 218 |
| Shironasu | 218 | 218 |
| WCGR112-8 | 218 | 218 |
| White Egg | 216 | 216 |
| PI 286106 | 229 | 229 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_03 | 8.4 |
| LW2010 | E_03 | 35.6 |
| LWA2010 | LWA_03 | 35.525 |
| LWAE2012 | E_03 | 44.894 |
| LWF2_2022 | E_03 | 34.6 |
| N28F2 | E_03 | 10.9 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_MboI0142K01_T7_363733 Chromat_file:SL_MboI_142_K01-T7 SGN_GSS_ID:380944 (vector and quality trimmed) | 2e-07 |
| TomatoBAC_end | BLASTN | SL_EcoRI0087L04_SP6_353418 Chromat_file:SL_EcoRI_087_L04-SP6 SGN_GSS_ID:370244 (vector and quality trimmed) | 2e-07 |
| TomatoBAC_end | BLASTN | SL_EcoRI0066D01_T7_338437 Chromat_file:SL_EcoRI_066_D01-T7 SGN_GSS_ID:355263 (vector and quality trimmed) | 2e-07 |
| TomatoBAC_end | BLASTN | SL_EcoRI0130K13_T7_334573 Chromat_file:SL_EcoRI_130_K13-T7 SGN_GSS_ID:351399 (vector and quality trimmed) | 2e-07 |
| TomatoBAC_end | BLASTN | SL_EcoRI0128B23_SP6_333008 Chromat_file:SL_EcoRI_128_B23-SP6 SGN_GSS_ID:349834 (vector and quality trimmed) | 2e-07 |
| EST Name | Species | Strain |
|---|
