| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_03 |
| Marker Type | SSR |
| Map Position | 11.6 |
| Annotation | |
| Source Name | emk01J09 |
| Source Type | genomic |
| Source Sequence | ACACTCACATTTCCAACTTTTTAATGTTTCATTATTCTTT TGTTAAAAAAGAAAATTGCATAAAATTTTAAAGTTCAATT TCAAATTATCTAATATTTGTATTTCAGACATAGTCAACAT GAAAACTATTTTATTCCAATGAAATGTTCTTCAAAACTTA TAGTTCAGACTATCACAATTAATTTAGCAAGTACCTCTTA TATATAGATAGTGAATTGAGGATGGGACACTAAATGAAAG GGACCATAAGATGGGTATTCGCGATACAGGAAAGTTGTGT GAAGCTATAAGTTATGACTTTCCATGAGAATTTAGATAGT CTAGTTGAGTTGTCAATGTAGAGCAAACTAGTGTAAGCAT TCTTTATTGCCTTTAGTAACTAGGTTGATAGGGATTTATG TATGAATGACGATAAGTCTCCTCGTGTAATCCAAGACTTC CCTAATCACACACACACACACACACACACACACACACACA CACACATATATATATATATTGAATTTAAGTAATTTTGACT AAGAGGTTAGATAATAAGAGTGAATAAAGTGATTATGCAT GCCAATAAGAGTAGTAGGTATAGAAACATGCCTACAGAGC AAGAAGGAAGTTAAAAGTCGCATCCTAGAAGA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)19a(ta)6 |
|---|---|
| PCR product (bp) | 190 |
| fwd primer | emk01J09/U |
| fwd primer seq. | tcctcgtgtaatccaagacttccc |
| rev primer | emk01J09/L |
| rev primer seq. | tccttcttgctctgtaggcatgtt |
| fluor. primer | emk01J09/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-acctcgtgtaatccaagacttccc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 190 | 190 |
| EPL-1 | 190 | 190 |
| LS1151 (S.linneanum) | 164 | 164 |
| LS1934 | 219 | 219 |
| LS4021 (S. incanum) | 198 | 198 |
| Nakate Shinkuro | 190 | 190 |
| Senryo 2 | 184 | 190 |
| Shironasu | 194 | 194 |
| WCGR112-8 | 190 | 190 |
| White Egg | 188 | 188 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_03 | 11.6 |
| LW2010 | E_03 | 38.3 |
| LWA2010 | LWA_03 | 38.782 |
| LWAE2012 | E_03 | 43.177 |
| LWF2_2022 | E_03 | 41.9 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
