| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_03 |
| Marker Type | SSR |
| Map Position | 0.0 |
| Annotation | |
| Source Name | emk01C06 |
| Source Type | genomic |
| Source Sequence | ACGTCATCAATCTTTCACGTCATCCCAGTTCCTGCTCTTC AAAAGGTAATTGTCCAGACTCTATTCCTTCTCGTGTTGTT TGAATGTGGCTGTTAGATTATGGGAGATAGTATGACCTAT TTTGGTCATGTTTGGGGGATACGAAATAGTCATGTTATAA TGTTTAATGCTGATGTTGCTGCTGTTATTGCCTGTGGTGA TTTGTATGGCTGTGGAATTAGGATCGATACGGGTTTTGTG TGTCTCTGCTTAACGCCTTTGGGTGGTCTCCAGCTCTTTC CTTTTCTAGCCAAGCAAATGTTTTAAAATGATCATTTCAT ATCATTTTAATGTGTTATGTTAAACATTTGATTTGTGTTG TGACTATCGATTGAAATGATTTCAAGTTTATGATGATGTG CTGGAGAATCTTTCTCCATTTTTGTCTTTATTTTAGATGT TGTTTCAACTTTTCTTCTTTTTACATCTGTCAAGATTAGA TGAACGTAACCGATGACTGCTTTAATTCTTGTTGGAACAT GACTTGTTTATTGATGTCTGAGGTCTAACATGTTACAGTT TGCCTTTCTGGGTGTCATCTCCATGTATTTAAGTCACAGT CGTAAGTATAGTCTAGTAGAATGCTAATTAAGTAGTTTTG CTTTCATCTTGTTCGGTCTATCCTGAATCTGAAGTTTTGG GGTCACAAATAATATATATATATGTGTGTGTGTGTGTGTG TGTGTGTTTTCACTAAAAGTTTACTGAAAATGCATAAAGC ATGAGTGTGTTTCTCGTTTGTGCTTCTGCTAGCAA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)5(tg)12 |
|---|---|
| PCR product (bp) | 241 |
| fwd primer | emk01C06/U |
| fwd primer seq. | tacagtttgcctttctgggtgtca |
| rev primer | emk01C06/L |
| rev primer seq. | tgctagcagaagcacaaacgagaa |
| fluor. primer | emk01C06/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-atcagtttgcctttctgggtgtca |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 244 | 244 |
| EPL-1 | 246 | 246 |
| LS1151 (S.linneanum) | 205 | 205 |
| LS1934 | 254 | 254 |
| LS4021 (S. incanum) | 297 | 297 |
| Nakate Shinkuro | 246 | 246 |
| Senryo 2 | 246 | 246 |
| Shironasu | 246 | 246 |
| WCGR112-8 | 246 | 246 |
| White Egg | 246 | 246 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_03 | 0.0 |
| LWA2010 | LWA_03 | 27.207 |
| LWAE2012 | E_03 | 53.956 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
