| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_03 |
| Marker Type | SSR |
| Map Position | 8.9 |
| Annotation | |
| Source Name | emi03G16 |
| Source Type | genomic |
| Source Sequence | CTAATGTAGAAGAAATACCCTCATTTATTTCTCGTATCTG CAGGTAACTCAATTTCATTGTTAACTTTGTTGTATGATAG TTAAACTTTTCAATGTTGGATGTTGTGTTATAGTTGGAAA TTCATAAAGTTCATGTGACATTGAAGGACGAATGCTCTTA AGGGGGAAAGGATGTTAGAACCCGTATTTTTGTGCATTGG AGCGGTTACGGAGATTTGAGACCTAAGTGTCAATTTTAGA AAATTTAGGACCAAAGAGACATTATCAGAAAGTTTGGGGT CAAAGTTGAATATTTCAAAGAGGTGTGTGTATGACCCTAT ATATACATATATATATGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTACACTTGTACACATACAAGACCATTA ACTAATTGTCTTTCACAAAATGTGTTGCAAAAAATCTAGA ATGTTGATAAGGTTGGCCCACTTAACTTTGTCACATTTCT ATTGGTACACTTGTGGGATGTGGGACCAAGATTTTTCTTT GGCTCTAACTATATATGTACAACACATGTACAAGATAACA TACATACTCTCCCACACTTAGAAAAAAAACAACATCATCA AGACCCTTCTCTTCTTGCTCTCGGGTTGCTACAGTAAGTA GCACCCATAATTCACTTTCTTCGATCTTTGAATTATTTTG ACGCTACAAGCCTAGTATATTAGACCCCCTAAGTAGTACG AAAGCGTTGGTTTGTCAAGAAAATACTTCGTAATTCAAAT TTGGCGATTTGAATTCCTTAAAGGGTTTATAAGTTATGTT GATTTTAATCTTGTTTTAGCTAAATTTAAAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)3tatgaccc(ta)4ca(ta)4(tg)19 |
|---|---|
| PCR product (bp) | 284 |
| fwd primer | emi03G16/U |
| fwd primer seq. | aacccgtatttttgtgcattggag |
| rev primer | emi03G16/L |
| rev primer seq. | agtgggccaaccttatcaacattc |
| fluor. primer | emi03G16/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-atcccgtatttttgtgcattggag |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 277 | 277 |
| EPL-1 | 286 | 286 |
| LS1151 (S.linneanum) | 275 | 275 |
| LS1934 | 283 | 283 |
| LS4021 (S. incanum) | 281 | 281 |
| Nakate Shinkuro | 277 | 277 |
| Senryo 2 | 275 | 275 |
| Shironasu | 277 | 277 |
| WCGR112-8 | 277 | 277 |
| White Egg | 277 | 277 |
| PI 286106 | 275 | 275 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_03 | 8.9 |
| EW2009 | LG10 | 32.1 |
| LW2010 | E_03 | 36.5 |
| LWA2010 | LWA_03 | 36.569 |
| LWAE2012 | E_03 | 45.938 |
| LWF2_2022 | E_03 | 38.5 |
| N28F2 | E_03 | 15.2 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
