| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_03 |
| Marker Type | SSR |
| Map Position | 11.2 |
| Annotation | |
| Source Name | emh04G12 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNAAATGATGGTGAAGAA TCTATTTGTATCAGTGACAGGACATGGCAGAATGCTTGAT GAATAAGAAGAAAAAAAAGGAAGAAATTGGGTTTGGCGGA GAAAGTGAAAACATTCAGTTCTTTTCCTTTTAGTTTGATT TTGAAATAATGATAAAAATTTAAATTTGAAATTAATTGAG AAATTTTTTTATTAGACAACTGAAAAATAGGTGGATCAGG ATGATATTGATTAGACTACTTAAACTTATGAGTGAGTTGA GAATAAATTAAAGAGGAGTGTGAAAGTATATACTACGTAT CTGAAAGATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGT AAAAATAAGAGATTTCTATCATTTTTTCAAACAATAGTGA TTATTAGAAATTATAGTAAAATAGATTGTCTAGTTGTGCA ATTTTTCCAAAACTATATTACCAGGGGAGGAAAGTTAATT AAACGTAAGAACAAAAAATTGAATTCATAGNNNNNNNNNN NNNNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)3ctacgtatctgaaagatgg(ag)14 |
|---|---|
| PCR product (bp) | 269 |
| fwd primer | emh04G12/U |
| fwd primer seq. | caactgaaaaataggtggatcaggatg |
| rev primer | emh04G12/L |
| rev primer seq. | cgtttaattaactttcctcccctgg |
| fluor. primer | emh04G12/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-atactgaaaaataggtggatcaggatg |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 268 | 268 |
| EPL-1 | 266 | 266 |
| LS1151 (S.linneanum) | 256 | 256 |
| LS1934 | 260 | 260 |
| LS4021 (S. incanum) | 249 | 249 |
| Nakate Shinkuro | 266 | 266 |
| Senryo 2 | 266 | 266 |
| Shironasu | 266 | 266 |
| WCGR112-8 | 266 | 266 |
| White Egg | 264 | 264 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_03 | 11.2 |
| ALF2 | AL03 | 4.7 |
| LW2010 | E_03 | 38.0 |
| LWA2010 | LWA_03 | 38.241 |
| LWAE2012 | E_03 | 47.39 |
| LWF2_2022 | E_03 | 40.8 |
| NAF2 | NA03.1 | 37.2 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
