| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_03 |
| Marker Type | SSR |
| Map Position | 87.8 |
| Annotation | |
| Source Name | emh02B10 |
| Source Type | genomic |
| Source Sequence | CTGCAAATTATAATGATATATTATATTTTTTTATAATTTA TTCTTAATTTAGTCAAGTCCAAAGACGAATATTAGATATG ATAGAGCGAATTTGCGTAAAAAGAAACAAAACTAGTTTCT GTGTGTGATGTCCACACCTGACGCCTTCAGCGCTGCCACA AAACTGAGAAACGAAATGAAAGGAGAGGAGAGGAACGAAA ACCGAGGCACCTCTATTAACAACCACTCTCTTTCTGCTCT GCTTATTTCTCAGACTCCTTTTATAATTAATACAGTATTT ATACATTCTGCTTATACGGATTTGTATTTCTTATGGATAT CCCAACTTCTATTTATACGGAAAACGCACAAGCAGATGTT GTAATTTTTCAAAATGTCGCACAAAATAGAAGGTAAATTT TCTAAAATGAAAAATAATTTAAAAAAATACTGCTAAACTA TCACAAAATACCTAAATACATCTCAACGCTGAATTAGTTT ATCGAATATCTCAAAATTTTGTATGTATACTCATGGGCAT GTGAATACAAGAAAAAATGAAATTGTTGTTCTCATCTTAT ATGTTCCACTTGTCCACCAGCAGAGAAAATAAGACATTTA TGGGCACCCGAAGAGTGTAACACACACACACACACACACA CACATATATATATATATTGTACACGCCAGTAATCTTCTTT CACTGGGATCTTCAAACTATGAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)12a(ta)6 |
|---|---|
| PCR product (bp) | 100 |
| fwd primer | emh02B10/U |
| fwd primer seq. | aataagacatttatgggcacccga |
| rev primer | emh02B10/L |
| rev primer seq. | cccagtgaaagaagattactggcg |
| fluor. primer | emh02B10/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-attaagacatttatgggcacccga |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 111 | 111 |
| EPL-1 | 111 | 111 |
| LS1151 (S.linneanum) | 92 | 92 |
| LS1934 | 103 | 103 |
| LS4021 (S. incanum) | 100 | 100 |
| Nakate Shinkuro | 111 | 111 |
| Senryo 2 | 109 | 109 |
| Shironasu | 111 | 111 |
| WCGR112-8 | 111 | 111 |
| White Egg | 109 | 109 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_03 | 87.8 |
| LW2010 | E_03 | 108.9 |
| LWA2010 | LWA_03 | 110.831 |
| LWAE2012 | E_03 | 118.104 |
| LWF2_2022 | E_03 | 130.6 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0118H03_SP6_325576 Chromat_file:SL_EcoRI_118_H03-SP6 SGN_GSS_ID:342402 (vector and quality trimmed) | 1e-19 |
| EST Name | Species | Strain |
|---|
