| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_03 |
| Marker Type | SSR |
| Map Position | 9.0 |
| Annotation | |
| Source Name | emf11F18 |
| Source Type | genomic |
| Source Sequence | TAGGCCTTGCTAGCAGAAGCCTCTAGATATACCTAGACCC TCTTTTTTAAAACTTACTTCCGACATGACCCATGGGATAA ACACTTACATATCTAAAGAGTTTAATGTTACCATCTAAGG TTGAGATGTGAGGTCTTATCAACCATAAGTAGAATTGAAA CATCCCAGAGTTAGAAGGATGATGATGGAAAGAGAGGGAT CAGATAGCAAGAGTGATAGTTGATTGAGGCTTGTAGTTAG AGTTAGTACCTATTAGGTAAGTAATGAGATGACGGGTCGA TTGCCATACGTTTGATAAAAGAGTCATGAGTACCCTGTGA TTGTCAGGATGAGGTATAGAGAGAGAGACAGAGAGAGAGA GACAGAGAGAGAGAGAGACAGAGAGAGAGAGAGTTAGTAT CAGGATATGTGAGAGCATGCCCAGAACTAGAAGAAGTATG CTGATGTGTTATGTATCATACTATTA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)5ac(ag)6ac(ag)7ac(ag)7 |
|---|---|
| PCR product (bp) | 160 |
| fwd primer | emf11F18/U |
| fwd primer seq. | gtaatgagatgacgggtcgattgc |
| rev primer | emf11F18/L |
| rev primer seq. | gcatgctctcacatatcctgatacta |
| fluor. primer | emf11F18/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-ataatgagatgacgggtcgattgc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 166 | 166 |
| EPL-1 | 166 | 166 |
| LS1151 (S.linneanum) | 136 | 136 |
| LS1934 | 155 | 155 |
| LS4021 (S. incanum) | 151 | 151 |
| Nakate Shinkuro | 166 | 166 |
| Senryo 2 | 166 | 166 |
| Shironasu | 166 | 166 |
| WCGR112-8 | 166 | 166 |
| White Egg | 151 | 151 |
| PI 286106 | 149 | 149 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_03 | 9.0 |
| LW2010 | E_03 | 36.2 |
| LWA2010 | LWA_03 | 36.21 |
| LWAE2012 | E_03 | 45.521 |
| LWF2_2022 | E_03 | 39.1 |
| N28F2 | E_03 | 17.3 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
