| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_03 |
| Marker Type | SSR |
| Map Position | 9.0 |
| Annotation | |
| Source Name | eme36B11 |
| Source Type | genomic |
| Source Sequence | TCCGACAAGAATCAATAACACAAGAAGTTTTATAAACATC CCGTAGCCTCTTTGAGATAAGTCACGGACGTCTCTGTACT TATCCACAAGACTCTACTAGAGGTTAGCTCTGTATAGATG AGACTAGTGAACCTTAAGCTCTGATAGCACCTTGTCACGA CCTAGTCACGGTCATGATGACGCATGTTAGATCTCACCTA CAGGCAAGCCAATTACCCTAAGCCACAGGGTACCTGTCCT AGCTCTCTTGGAAAACCATGGCAACCACAATAATATAAAT AACTAAAACCTACCCATAACCTGGAAGTCAACTGTACATA GCTACTATAAACTCAAATAAGATATATATATATATACATA TATATATATATGTGTGTGTGTGTGTGTGTGTACATACATA ACTAGAATAACAATCTACACATATAAATCTACTACATATA CAAGGCTAGTGCCTGAATACAAAAGACGACCGTCAAAACA AAAAGAGACTACAAAACATCCAAAGTTGTTGATGCTCACC ATTGTCTTCAGAATTGCTTGCAAACCCCTAACTCAATGAC TATAGCTAGTAACTGGACCTTAACCATTGGAAGA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ta)7ca(ta)6(tg)10 |
|---|---|
| PCR product (bp) | 270 |
| fwd primer | eme36B11/U |
| fwd primer seq. | caagccaattaccctaagccacag |
| rev primer | eme36B11/L |
| rev primer seq. | gacggtcgtcttttgtattcaggc |
| fluor. primer | eme36B11/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-atagccaattaccctaagccacag |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 282 | 282 |
| EPL-1 | 274 | 274 |
| LS1151 (S.linneanum) | 249 | 249 |
| LS1934 | 280 | 280 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 282 | 282 |
| Senryo 2 | 282 | 282 |
| Shironasu | 282 | 282 |
| WCGR112-8 | 282 | 282 |
| White Egg | 274 | 274 |
| PI 286106 | 276 | 276 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_03 | 9.0 |
| EW2009 | LG10 | 32.1 |
| LWA2010 | LWA_03 | 36.124 |
| LWAE2012 | E_03 | 45.423 |
| N28F2 | E_03 | 15.2 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
