+Marker Data: est_smfl27d13

Crop eggplant
Population AL2010
Linkage Group E_03
Marker Type SNP
Map Position 9.6
Annotation
Source Name SmFL27D13
Source Type 16k_SmUnigene
Source Sequence
Developer NIVTS
Document
Typing_Method Tm-Shift
Marker_Class EST-misc
STS_primer_fwd catgattccaaagaccaaagatgag
STS_primer_rev tactttggagcctctccagcatct
amplicon_seq NCTGGGCTATTTATGACAAGGTGAGAAATGATCTGTCAGTTTCAATCTCTTGCTTTAATACATGCGAAGGTTTCATTGGATTATAGCTAATATTATCAAGTTAATTCATATGCTTGTATCTTAGAGTTGTATGATACCTGGTAGTGGTACCTACAACTTCTAGCCTGTTAGTGGACCTTTGTTTTACTTGGCAATGACTCATCTTGTGTAAGAAGATTTGGTAATAGGAACACAGCTATGCATTTTCATATTGATGTGTTCCTGCAATTAACATAAAGCAGAGTGGGTGGAGACCTGAGAGATAGCATACCCACTTAGCTCCTAGGATTTGGAGGGCTTTTATTAATATCGTGGTTGATTTTTGGGTTAGGTATCAAAAGTTCCCTCAAGCAGAACTTGTCCATATGTCTACAAAAATCACTTTTAACTGAGATAATACAGCCAGACATTTGGATATAGGTTCTGCCCCCAAAATAGCTGGTCTTTCTTTCCAATCACATGTTTCTTTCGTCACTATTTGTATGTTTGAGCTCAATAATACTAAGAGCAACTAGATAATCCCCTTTAAATTATTTTCACAAAGAACGGAACAAATGAATGATTTTCAGTATGCCTTATCGGCAGATACCACAGAACTTGTAAGACTCTGTATTTGTCGAAATATGCCTGAGATGTATGCTAGTTCTAAAACTCATGTCATCGACTCTCTGGTAAATAAAGATAGGTTTTTATTGGATGANGTACTGTGTTCTTAGCGTTAGCAGTACATATATTCATGATGATCCTATTGTAGTGTCTTTTATATTTTTTTNATGGCATCTTCTTTTTGTGNNNNNCACAAAATGTTATTCATGAGTCGATGAATTGCATGCTACTTGTCATAGTNNNNNGCTATCATCTTTAAGAAAAAACCTATAGATATTGAGACCCACTCACTGTCAAATCTAGAACACAGGTTAAGTGAGGCGAAGCACTAAACTGCGCAACACCAAGCTTCAGGGCCTCTGGGCTTAGCATACCTCAAGAGGGCTAACACTATTGCACTTTCGCTCGTAGTCTACCAGCTGCTTGAGTGAGAAGAATTAAGCTTGACCCTGGGTAGTTGACTGAAAGACAATATTTAACTCCCTTGACATGGTGAGGACTAATAGGTATATAGGCATCCTAAGTTCCTGATCAAGAAAGGAATATAGGCATCATGAGTTTTCCGGTAAGATTATGGGGAGAGTGTACTTTGGCTTGTAAGAATTGTTTATAGCGAGAATCGCTGCATATAAGTTGACACAAAATTGGTCGCCTTCCAGATGTCGTTGATATTAGATCCACCTTGTAGCCATTAGGAATGTTAACAATTACTAGTCATGTAAACTACAGATGCATCTAGCACCCTAGTTCCTGTTGGTGTCCCAAGGTCCTAATAGGCTTATTTCATTTGAAGCTAAATCTCTTGGCCAAAATAACTTGAATTTAATGTTGTGAGCTTTTGCCAAGTTACATTTTGTAGATCCTTTTTCGGGTCTTCTATTGTTGGTTTACTGGAGGTATGAATGTTTATAGTCTGTATCTGCTTTGCTTTTCACAGAATGCATTGCATGAAAGGATGAGACCGTGGATCAGTAAGAAGATTACTGATTTTCTTGGTGAGGAGGAACCGACGCTGGTAGACTACATNGTCTCCAGCACTCAAGANNNNNNNN
SNP_position 67
allele_1 A
allele_2 G
ASP_primer_S GCGGGCAGCTATAATCCAATGAAACCTT
ASP_primer_L GCGGGCAGGGCGGCAGCTATAATCCAATGAAACCTC
Common_primer TGATCTGTCAGTTTCAATCTCTTGC
enzyme Stoffel frag.
dye EvaGreen
Line allele-1 allele-2
AE-P03 A A
LS1934 G G
Nakate Shinkuro A A
WCGR112-8 A A
Population Linkage Group Position
AL2010 E_03 9.6
LW2010 E_03 36.2
LWA2010 LWA_03 36.476
LWAE2012 E_03 45.671
LWF2_2022 E_03 39.1
DB Program Definition E-Value
EST Name Species Strain