| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 0.7 |
| Annotation | |
| Source Name | emk02M14 |
| Source Type | genomic |
| Source Sequence | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNC CTTCAATGCCAATGTTCAATCCCTTTAACACTTTTTTGTA ACCTGATTGAAGACATCAAAATAAGAATTTAATGGGATAA TTAGTTAAATTAATGGTGGAGCAGAGTAACTTTTATTATG GGGAAAGAGTGATAAGAACTTTCTCGGGAAACATGGGAAG AACTAAAGAATCCACCCAAACTCTCTATATTTCACATCTG TTTATCCAGACAACTCACAGAGCAGTGTGTGCGTTTGTGT GTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGTCAGGGA GAGAGAAACCTAGACAAAATTGATGGGGAGCTGCACCAAT GTTTGAGCCAACAATGCATCCTGTATCTCTTAATCTGGCG ATGAAATTAACTTTGACCTGGACAAAAGAAAGGATCATTC AGCAGCATGATGTTTGCACCATGTCTGTCTCAATTTTCAA ATAGAATCACCTGTTTTCCTGGAGAAGCAACTTTCCCGTC CGCTTTTCCCTTAACCAGCACCTCAACAGCCAGTCCATCC GGTAATGCATTTATCTGTGTTNNNNNC |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)3cgtt(tg)9(ag)10tcaggg(ag)3 |
|---|---|
| PCR product (bp) | 206 |
| fwd primer | emk02M14/U |
| fwd primer seq. | tctcgggaaacatgggaagaacta |
| rev primer | emk02M14/L |
| rev primer seq. | gatacaggatgcattgttggctca |
| fluor. primer | emk02M14/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-actcgggaaacatgggaagaacta |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 205 | 205 |
| EPL-1 | 207 | 207 |
| LS1151 (S.linneanum) | 203 | 203 |
| LS1934 | 207 | 207 |
| LS4021 (S. incanum) | 201 | 201 |
| Nakate Shinkuro | 207 | 207 |
| Senryo 2 | 205 | 205 |
| Shironasu | 205 | 205 |
| WCGR112-8 | 205 | 205 |
| White Egg | 205 | 205 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_02 | 0.7 |
| LWA2010 | LWA_02 | 1.474 |
| LWAE2012 | E_02 | 2.127 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0013E08_SP6_291940 Chromat_file:SL_EcoRI_013_E08-SP6 SGN_GSS_ID:308766 (vector and quality trimmed) | 4e-07 |
| EST Name | Species | Strain |
|---|
