| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 8.1 |
| Annotation | |
| Source Name | emj05M23 |
| Source Type | genomic |
| Source Sequence | TATTCTTTTTTTGGTCATCAGCGAAGGTGGCGGTTAACAA AGTTTGATCTTGAAAAAATTTCCATGAAAGAGCACAGGTC CATAAACGTGGTGGTTTGCAGAAAAAGAAGGGTGGTAAAA ATAAAGGTGAAGCCTCCGAATAGAAGACACTATACGTAGA TGAGAAGCTAATAGATGCACGAAGTTTTTAATTTCTCACA AAGAAATCTTTATGGTAATTTTGCAGTTTCAAGATCCCTT GGTTGATAAATTGGCGAAATGGGTTTTTTGAGGGGAAAAG GTTATGATTTATGGGGAGGTAGAGGAAGGATGTAAAGGGT GCAAGAGAAGGGTAGAATTGTAAATGCACAAGGAAAAAGG GGTTGATGGATTGTGATGGCGCCATGTAGGCGGGCTTCCA ATCTACTTATATGTGTGTGTGTGTGTGTGTGTGTGATATT TTTTACTAATTTTAAAAATTCCCAAAATCCCTCTTTTCCT ATTTCTCTCTATATACGTCTGATACACTACTTTTATTTTC ACACCTCTTTTGTTAACAACTGATGTGCTGTCAAAATACA ATATTTTTTATACTTAAAACTTAGGATTTTGTGTGTCCTC GATGCAATACTTGTGGATTTTATGTGTTTTGTATATAGAT TTGCACGATTACAGATTGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)12 |
|---|---|
| PCR product (bp) | 266 |
| fwd primer | emj05M23/U |
| fwd primer seq. | aggaaaaaggggttgatggattgt |
| rev primer | emj05M23/L |
| rev primer seq. | ccacaagtattgcatcgaggacac |
| fluor. primer | emj05M23/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-aggaaaaaggggttgatggattgt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 271 | 271 |
| EPL-1 | 271 | 271 |
| LS1151 (S.linneanum) | 246 | 246 |
| LS1934 | 267 | 267 |
| LS4021 (S. incanum) | 244 | 244 |
| Nakate Shinkuro | 267 | 267 |
| Senryo 2 | 271 | 271 |
| Shironasu | 267 | 267 |
| WCGR112-8 | 271 | 271 |
| White Egg | 267 | 267 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_02 | 8.1 |
| ALF2 | AL02 | 9.1 |
| LW2010 | E_02 | 7.0 |
| LWA2010 | LWA_02 | 7.903 |
| LWAE2012 | E_02 | 8.311 |
| LWF2_2022 | E_02 | 19.4 |
| N28F2 | E_02 | 8.2 |
| NAF2 | NA02.1 | 19.0 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
