| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 6.9 |
| Annotation | |
| Source Name | emh21J05 |
| Source Type | genomic |
| Source Sequence | CATTCAACATCAGCATGTAAATAGTTAAAACAAGTGTAAT ATTCCAGAATCTAGCAATCAGAAATTAGCTAGTCCATCTT TCTGGACCCATACAGCATAATTAATTTTTGTTTGTTTGTG CATGGAAATAAATGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAG AGAGACCGCATTGTCTGAAGTCCAAAGGGTAAGATTGTCT CGGAGAAGTTGCATGATCAATGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)23(ag)13 |
|---|---|
| PCR product (bp) | 196 |
| fwd primer | emh21J05/U |
| fwd primer seq. | gctagtccatctttctggacccat |
| rev primer | emh21J05/L |
| rev primer seq. | acattgatcatgcaacttctccga |
| fluor. primer | emh21J05/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-actagtccatctttctggacccat |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 207 | 207 |
| EPL-1 | 207 | 207 |
| LS1151 (S.linneanum) | 192 | 192 |
| LS1934 | 194 | 194 |
| LS4021 (S. incanum) | 176 | 176 |
| Nakate Shinkuro | 194 | 194 |
| Senryo 2 | 205 | 205 |
| Shironasu | 207 | 207 |
| WCGR112-8 | 206 | 206 |
| White Egg | 194 | 194 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_02 | 6.9 |
| ALF2 | AL02 | 8.4 |
| LW2010 | E_02 | 5.9 |
| LWA2010 | LWA_02 | 6.827 |
| LWAE2012 | E_02 | 7.293 |
| LWF2_2022 | E_02 | 18.3 |
| NAF2 | NA02.1 | 16.8 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0032C06_T7_140256 Chromat_file:LE_HBa_032_C06-T7 SGN_GSS_ID:157087 (vector and quality trimmed) | 4e-08 |
| EST Name | Species | Strain |
|---|
