| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 68.0 |
| Annotation | |
| Source Name | emh02E08 |
| Source Type | genomic |
| Source Sequence | TCCAAAGGGCATCGGCGTTCAGCAGAGAAGAAATTAAGTG ATAGAATTTGGGATGAATTGGTGAGTGATGATGAAGAGGA GGAGAGTGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAA GAGGAAGAGGAAGAGTGAAGAGGAAGGTGAAAAGGATGAA GAGTATTTTCCAGGATCCTTAACAAACTTTCAGATGCCAC TTAAGGAAGCATTGAATAATTTAAGAACTTCCACCAAGGG AAAAGTTCTTAGAAATGCATCTATGAGAAATAAAGGGAAT GATGAAGAGAAAGATGAGCCTTCCCAGTGCAAGGACAGGC TCAAAGTATCTCCCTCCACAAAAAGCGTTCTTCCGAGAGG AAATTCTCAGACAAAGAGGATGCCTGATAAAGTAAATCTA GGACTACGTGCAGGAACTTCAAGCAAGAAGATAACTCCTA AAGGAGATAGTACAATGAACAAGGTGGAATTTGGAAGTGA AGAAAAGCGGGGCATGTGCAAGAAAAAACCAAGTTTATCC AAGGGTGGGAAAAAAATGCCAGGGACTCGTATTCAATGCT CAGAGAATAAGAGGCGGGTGCCTTCTATATTAAATGGAGA ACAATGTCTGGGAATGCCAAGCAAGAAGAAGATTCCTCAA GGAGAGAGTACAATGGAGGTGGATGAAAGTGAAGACGAAT GGACTGTGTGCAAGGAAAAGCCAAGCTGTGGATATCATCA ACCCATATAATCTATGCTGTGCGCTAAATTGACCGGGAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tga)3a(gag)3agtgaagaggaagaggaagaggaagag(gaa)3 |
|---|---|
| PCR product (bp) | 199 |
| fwd primer | emh02E08/U |
| fwd primer seq. | cggcgttcagcagagaagaaatta |
| rev primer | emh02E08/L |
| rev primer seq. | tgcttccttaagtggcatctgaaa |
| fluor. primer | emh02E08/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-aggcgttcagcagagaagaaatta |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 216 | 216 |
| EPL-1 | 199 | 199 |
| LS1151 (S.linneanum) | 199 | 199 |
| LS1934 | 205 | 205 |
| LS4021 (S. incanum) | 205 | 205 |
| Nakate Shinkuro | 199 | 199 |
| Senryo 2 | 199 | 199 |
| Shironasu | 199 | 199 |
| WCGR112-8 | 216 | 216 |
| White Egg | 199 | 199 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_02 | 68.0 |
| ALF2 | AL02 | 71.7 |
| EW2009 | LG08 | 62.0 |
| LW2010 | E_02 | 48.4 |
| LWA2010 | LWA_02 | 51.384 |
| LWAE2012 | E_02 | 51.777 |
| LWF2_2022 | E_02 | 78.9 |
| NAF2 | NA02.2 | 2.5 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
