| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 0.7 |
| Annotation | |
| Source Name | emf11G04 |
| Source Type | genomic |
| Source Sequence | GGTTCAAGCCAAGATTTTAGTTTTCGAGAATGAGGTGTCC TCTTATGACAACATGGACTTCTTGACCACTGACAATTCAA CTTGCTTAGAGTAAAAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGGCTAGTCATTAAGATTTGATCAACG ACAAATTATTCTTAGATTAGGCTCCCTCCCCCCTCTTTTT TTTAGACTTCCTTTCTTTATTTTCTCATAATTTAGATTGA TATGTTAGATAATTTTATAGCAATAAAGTTTTTCTATTTT TTTGTCTCATATCTTGCATTTGTGGTTTTAACTTTAATTT TCTCACATGCTTTCTTTTGTTGCAAGCCTTAGTAAGTCAA ACTTAACTCATATTTGACACACTAATAACAATGAAAATAA TAAAAGTTCCTTCTCTTTTAAAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)20 |
|---|---|
| PCR product (bp) | 299 |
| fwd primer | emf11G04/U |
| fwd primer seq. | caacatggacttcttgaccactga |
| rev primer | emf11G04/L |
| rev primer seq. | gcttgcaacaaaagaaagcatgtg |
| fluor. primer | emf11G04/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-atacatggacttcttgaccactga |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 303 | 303 |
| EPL-1 | 302 | 302 |
| LS1151 (S.linneanum) | 274 | 274 |
| LS1934 | 288 | 305 |
| LS4021 (S. incanum) | 274 | 274 |
| Nakate Shinkuro | 301 | 301 |
| Senryo 2 | 299 | 303 |
| Shironasu | 303 | 303 |
| WCGR112-8 | 301 | 301 |
| White Egg | 311 | 311 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_02 | 0.7 |
| LW2010 | E_02 | 2.0 |
| LWA2010 | LWA_02 | 1.706 |
| LWAE2012 | E_02 | 2.386 |
| LWF2_2022 | E_02 | 13.2 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
