| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 0.2 |
| Annotation | |
| Source Name | eme11F04 |
| Source Type | genomic |
| Source Sequence | CCAAAAAATGATGAAAAACAAAACAACGGACTACGTTGTC AAAATAAGCGACGCAATCCATCACTTTCTTATTTTTAATT TTTTAAAAAATATTTTAATTACAAAAAGTGACGGACAACA ACTATATAACCGTCACTTATTTTTGCGGATTTTTTTGGCA AATATTATTTATTTATTTTTAATATATTTTTATAAATTTC GACATACTCAGTGATGAAGTCCGTCGCTTATATATATTTT TTAAATTAAATATTTAATTATTTTAAACGTAGGAATTATA ATAAAGAAATAATATTTTTTTAAAAAAAAATGTGACGATG GACAGAGTGTCAATGTCCACCATTTTTTAAAAATAATTCC TATTAAAATAATTTAATCTTTATAATTATATTAATAATTA ATTATTATTTTAAAAAATGCAACAAATAGAGTGGGTATCT TCTGTCGCTTTTTTTATTAATTTTTTAAATAGATTTTTTT TAAAAAATAATATTTTATTTAAAAGAAGCGACAGACTCAA GGATGCAGTCCATCACCCCTAAATTAATATGACCCCCAAA TCAAATCATTTACCCCGACATTTGCCCCTCACTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCACATTAACGCTAAAAA CCCTAACCATGCCGCCTGATTGTCGCCATCGCCATCATCA ATGTCC |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)16 |
|---|---|
| PCR product (bp) | |
| fwd primer | eme11F04/U |
| fwd primer seq. | acccccaaatcaaatcatttaccc |
| rev primer | eme11F04/L |
| rev primer seq. | ggcatggttagggtttttagcgtt |
| fluor. primer | eme11F04/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-ACCCCCAAATCAAATCATTTACCC |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 106 | 106 |
| EPL-1 | 104 | 104 |
| LS1151 (S.linneanum) | 85 | 85 |
| LS1934 | 108 | 108 |
| LS4021 (S. incanum) | 83 | 83 |
| Nakate Shinkuro | 104 | 104 |
| Senryo 2 | 102 | 104 |
| Shironasu | 102 | 102 |
| WCGR112-8 | 98 | 98 |
| White Egg | 104 | 104 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_02 | 0.2 |
| ALF2 | AL02 | 1.9 |
| LW2010 | E_02 | 1.5 |
| LWA2010 | LWA_02 | 1.17 |
| LWAE2012 | E_02 | 1.878 |
| LWF2_2022 | E_02 | 12.6 |
| NAF2 | NA02.1 | 1.2 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
