| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 12.8 |
| Annotation | |
| Source Name | emd12B05 |
| Source Type | genomic |
| Source Sequence | CCTATTTGTATAGAAAGATATTGTTCAAGTTATTTCTTTG AAATTGTTTGACAAATTTTGAATTAAGTTGTATATATTAC TGTTGTATCTTTAAGTTCATGAACTTTGAGCCCATTCTAG TTCATTACGGTATTAATGTCTTCCGCTGAGTAAGTTACCC ATGCCAAGTGGTTCGCTTGGGATCAAAAATAGTTTTCGAG TGTCGGCCACGTCTAGGGAGTAGGCTCGGAGCGTGATATT AAATTTATTTTTAAAAAATTATTATGAAAACTGCAAATAA TCTTAGCTTTAAAAAAGCCTTCTATTATAAATTTCAAAAT TCATACTTATGTATTTAGTTGTCAAATACATACACACACA CACACACACACACACACACACACACACACACACACACACA CACACACACACACACACATATATATATATATATATATTAA AAGCGTGAAGACCCTTAGAAATGTTGTTTGGACTTTTTGC CCTTTCATTAAAAGACTTTGTTTTAGATAAAATCATTTTT TTACTATTTTTCTCTATTTTAATGATATTAATTATTGCCT ATAACATAAATCCTAAATAACGTGCCTAACTGGTATATGA ATAGATTCATAAATGTTGATTGAACTTTTTGCCCTTCATT AAAGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)33(at)9 |
|---|---|
| PCR product (bp) | |
| fwd primer | emd12B05/U |
| fwd primer seq. | ggagtaggctcggagcgtgatatt |
| rev primer | emd12B05/L |
| rev primer seq. | gaaagggcaaaaagtccaaacaac |
| fluor. primer | emd12B05/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-ACGGAGTAGGCTCGGAGCGTGATATT |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 268 | 268 |
| EPL-1 | 278 | 278 |
| LS1151 (S.linneanum) | 272 | 272 |
| LS1934 | 270 | 270 |
| LS4021 (S. incanum) | 233 | 233 |
| Nakate Shinkuro | 270 | 270 |
| Senryo 2 | 260 | 268 |
| Shironasu | 268 | 268 |
| WCGR112-8 | 294 | 294 |
| White Egg | 270 | 270 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_02 | 12.8 |
| EW2009 | LG08 | 18.7 |
| LW2010 | E_02 | 8.3 |
| LWA2010 | LWA_02 | 11.76 |
| LWAE2012 | E_02 | 11.251 |
| LWF2_2022 | E_02 | 22.8 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0222H06_T7_399060 Chromat_file:LE_HBa_222_H06-T7 SGN_GSS_ID:416254 (vector and quality trimmed) | 6e-09 |
| TomatoBAC_end | BLASTN | LE_HBa0207M16_T7_370771 Chromat_file:LE_HBa_207_M16-T7 SGN_GSS_ID:387982 (vector and quality trimmed) | 6e-09 |
| TomatoBAC_end | BLASTN | SL_MboI0017F22_SP6_214543 Chromat_file:SL_MboI_17_F22-SP6 SGN_GSS_ID:231369 (vector and quality trimmed) | 6e-09 |
| TomatoBAC_end | BLASTN | LE_HBa0148N03_SP6_101620 Chromat_file:LE_HBa_148_N03-SP6 SGN_GSS_ID:101620 (vector and quality trimmed) | 6e-09 |
| TomatoBAC_end | BLASTN | LE_HBa0152M13_SP6_73944 Chromat_file:LE_HBa_152_M13-SP6 SGN_GSS_ID:73944 (vector and quality trimmed) | 6e-09 |
| EST Name | Species | Strain |
|---|
