| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_02 |
| Marker Type | SSR |
| Map Position | 62.4 |
| Annotation | |
| Source Name | CAL02M06C |
| Source Type | EST |
| Source Sequence | GTCTGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNAATGTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTGCTTTGAAATGTTGGATAACATTTATTCAAT TTGTAAACACTAGTACCATCAAGTCTAAGCAGCATATTAT TATTATTATTATTATTATTATTATTATTATTATAACAGAA CAAGCACACAAAGGGCAACCAAAACATACTAAAACTTCAC TAGCAATAAATAGCAAAAATAAACAAGTTTCTCACAATCC TTCAGTGTAAGCGACACCAGTAGATTTTAACCATACTCCT CCTTGAATCAGCTGACCCACAGTGAATTTCATGGCCTCAG CTGTTGTTAAGGGTTTATGATAACCAGGCCAATTCACTCT CTTACTAACTCCAGCACCAGGCCCTTTGTTCATGTACTCA CCATAATACAACGTTTTCAATGCAAAATCACCTTGCCATT CTGACCAACCCGCTGGATCGATATGGTCCGCAATATTGGA CTGCATGTACACTGTCCGTGAATACGCTTTTCCATGGGTC GGCCCAAATACGTCTTTCACTGACCCCTTTCACTGGTGCA AGGTCGGAGCTAGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tat)13aacagaacaag(ca)3 |
|---|---|
| PCR product (bp) | 243 |
| fwd primer | ecm009/U |
| fwd primer seq. | cactagtaccatcaagtctaagcagca |
| rev primer | ecm009/L |
| rev primer seq. | ttaacaacagctgaggccatgaaa |
| fluor. primer | ecm009/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-atctagtaccatcaagtctaagcagca |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 228 | 228 |
| EPL-1 | 246 | 246 |
| LS1151 (S.linneanum) | 221 | 221 |
| LS1934 | 246 | 246 |
| LS4021 (S. incanum) | 217 | 217 |
| Nakate Shinkuro | 243 | 243 |
| Senryo 2 | 225 | 243 |
| Shironasu | 243 | 243 |
| WCGR112-8 | 225 | 225 |
| White Egg | 246 | 246 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_02 | 62.4 |
| ALF2 | AL02 | 66.8 |
| EW2009 | LG08 | 58.2 |
| LW2010 | E_02 | 46.1 |
| LWA2010 | LWA_02 | 47.624 |
| LWAE2012 | E_02 | 48.951 |
| LWF2_2022 | E_02 | 75.5 |
| NAF2 | NA02.2 | 0.0 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
