| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 51.1 |
| Annotation | |
| Source Name | emj01A18 |
| Source Type | genomic |
| Source Sequence | CCTTACGTGGGATGTTGGAGCTTAATCATGGAGTTTTGGA CTAAGGCATGTCACACATAGACTCCACACGTACGTGTGAG GCTTCACGGTAGCCTTAGTCTTGAAATTCCATAGTTTTGA GACCAAGTAAAGTGGGATGGCCGAATTAGTACATGTATGT ATATATAGTGTTATGTTATGATGGAATGATGAATTGATGC TTGGTTGGCATGATATGATCATTGTAGTGTAAAGAAATGG ATGGAAATCATCTAAATGTATATGTTGGTGCTGCGGTCCA TTTTTTATAAATGTGATAAAGTGATGGTATTTAGTGTTAT TCTTGTTATAATGGCATTGGAAGTGCTTAGTAATGTTGTT GTTGTTGTTGTTGTTGCTGTTATTGTTGTTGTGTTGATTA ATTGGAGCCGAGATGGATTCTCGGGGTGGTCTATTTTAAG AGAAAGTGCTGTCAAAATTTTTATAAAAATTTAAGACGAA TTTGGGATTTAAGGCCGAAAAGGGCTTTTAGCTAACCGTT GGCGTTGTTGTGATATGTTGTAGACGTGGACGTCCAGGAG CATAAATTGGATTGGATTTGCATTTGGATTAATTTGGACA GGTGATTGAGGTATGTAAAGCATTTCGTTCTTTGGCATGA TTTTGTTAAACTTAGCTAACATCATAAGTTTGAAAGCCAC TCAGTTCCAGATGTGCTAAGAGTTATGTTAGTTTAAAATT GACCCTTCTACCGGTACTTGTGTCGAAGTTAGCCAACGGA AAATCCTTTGAACTTGTCTTGACTTAGGGGTCCCATAATG G |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tgt)7tgctgttat(tgt)3 |
|---|---|
| PCR product (bp) | 182 |
| fwd primer | emj01A18/U |
| fwd primer seq. | aatgtatatgttggtgctgcggtc |
| rev primer | emj01A18/L |
| rev primer seq. | aaatagaccaccccgagaatccat |
| fluor. primer | emj01A18/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-attgtatatgttggtgctgcggtc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 194 | 194 |
| EPL-1 | 191 | 191 |
| LS1151 (S.linneanum) | 179 | 179 |
| LS1934 | 191 | 191 |
| LS4021 (S. incanum) | 179 | 179 |
| Nakate Shinkuro | 197 | 197 |
| Senryo 2 | 191 | 191 |
| Shironasu | 197 | 197 |
| WCGR112-8 | 191 | 191 |
| White Egg | 191 | 191 |
| PI 286106 | 193 | 193 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 51.1 |
| ALF2 | AL01 | 43.7 |
| LWA2010 | LWA_01 | 42.996 |
| LWAE2012 | E_01 | 46.925 |
| N28F2 | E_01 | 113.7 |
| NAF2 | NA01 | 15.6 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
