| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 73.8 |
| Annotation | |
| Source Name | emh21J12 |
| Source Type | genomic |
| Source Sequence | ACAGAACAATTCACCAGCAGTCAATAATCAGGAAGAAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAGAAA ACAAACTTCTTAAAATTTAAAATGGATATATGCTTTCCCC ACTGGGATGAAGTTACTGAATTAAAGATTTCCTCCTGTGA TGTTCATGACATAATAATAGCAAACCAACCAAAATAATCA TTTCCATTTAAAAAAGAAGGAAAAGGCCAGCATCAGTTAA ATATATGCATAACTAACAACTCTGCAGGATGCCATACCGA TACGATTTTCCCTGTTCCTCTGCATGAAGGACAAGTCGTC TGAAGTGTGAAAGGACCAGTTTGCGAGATTGACTGCAAAG GATTATTGAAAATACAAGATAAAAGGAGACAACATTATAC ACAGAGAAACATGCATGTCACCAGAAGTAAAGAATGAAAA TAAGCAAAGAGGCACTCACCACGCCAGAACCTTTGCAGCG CCTACAAGTCTTCAGGTTTAGTGCCAGGGGGCACACCACT TCCACCTAAAAGAGAAACAAGGGAAGGAGAAAAAAGGGAC TACAGTAAGT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)19 |
|---|---|
| PCR product (bp) | 299 |
| fwd primer | emh21J12/U |
| fwd primer seq. | acagaacaattcaccagcagtcaa |
| rev primer | emh21J12/L |
| rev primer seq. | aggaacagggaaaatcgtatcggt |
| fluor. primer | emh21J12/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-acagaacaattcaccagcagtcaa |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 299 | 299 |
| EPL-1 | 304 | 304 |
| LS1151 (S.linneanum) | 296 | 296 |
| LS1934 | 318 | 318 |
| LS4021 (S. incanum) | ||
| Nakate Shinkuro | 304 | 304 |
| Senryo 2 | 304 | 304 |
| Shironasu | 306 | 306 |
| WCGR112-8 | 316 | 316 |
| White Egg | 320 | 320 |
| PI 286106 | 318 | 318 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 73.8 |
| ALF2 | AL01 | 66.5 |
| EW2009 | LG03 | 78.0 |
| LW2010 | E_01 | 70.2 |
| LWA2010 | LWA_01 | 61.394 |
| LWAE2012 | E_01 | 65.272 |
| LWF2_2022 | E_01 | 115.5 |
| N28F2 | E_01 | 76.5 |
| NAF2 | NA01 | 49.9 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
