| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 51.1 |
| Annotation | |
| Source Name | emh03H10 |
| Source Type | genomic |
| Source Sequence | TGGCCTTGCTAGCAGAAGCCTTACCGGGTTTACTCGGTTT GCGGTTTGGTTTGGTTTGGTTCTGTTCACCAATTATCTAG CAAGAGAGATTGAGAGAGATGAGAGAGACGAGCGAGACCA AGAGAGGGAGGAGAGTGAGAGAGGGCAGAGAGACGAATTG TATATTTATATCTGATGAATTAACTATGTATATCTATTAA AATAATTATGTATATGCAGCTGGTATACCTATGTAATTAT ATTTGTGACAAGATACGTAGTTGTATATTTTTTTTTCTTT TATAAAGAGACTACTAGACCTGTAAAAAAAAGAAAATGAA AGCCACAGAACTCAAAGTACGAAAGTTAAAGTAATGTGTA TCAACTAAATGACTAAATTGCCCTCACTTTTCAATTTAAA GACAAATAACAGGCATGTTGAAAGTGCCTCTTAAGAGAAA AGAGAAAAGAAAAACGTTGAATT |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)3attg(ag)3atg(ag)3acgagcgagacca(ag)3ggaggagagtg(ag)3ggc(ag)3 |
|---|---|
| PCR product (bp) | 299 |
| fwd primer | emh03H10/U |
| fwd primer seq. | ggtttggtttggtttggttctgtt |
| rev primer | emh03H10/L |
| rev primer seq. | cgtactttgagttctgtggctttca |
| fluor. primer | emh03H10/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-agtttggtttggtttggttctgtt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 299 | 299 |
| EPL-1 | 299 | 299 |
| LS1151 (S.linneanum) | ||
| LS1934 | 336 | 336 |
| LS4021 (S. incanum) | 310 | 310 |
| Nakate Shinkuro | 299 | 299 |
| Senryo 2 | 299 | 299 |
| Shironasu | 315 | 315 |
| WCGR112-8 | 299 | 299 |
| White Egg | 299 | 299 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 51.1 |
| LWA2010 | LWA_01 | 42.983 |
| LWAE2012 | E_01 | 46.907 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
