| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 94.0 |
| Annotation | |
| Source Name | emg21B11 |
| Source Type | genomic |
| Source Sequence | CCAGGCATCACAAAGCATTATCAGAATGAGACTGAAAATT CCCAGCTAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTTTGGGGGGGGCTGAGATGGA GCAGAGGCTCACTCTGAAATCTCTTATTCAGTGGTGGAAA AAATTGATATTGTAGGTTTAGAGGAAACAATTAAAGCCTC TGGTACAAGGAGAGCATCATAACAATTTGGGAAAAAAGAT GGTGGACTTGCTCAGGGAGACAACATGGACTGTTTCCACC CTCTTGTTTAATTGAAAGCTTACAGGATGATTTTAGGTGG GTCTTCTTAGGGGTTTCAATTCTATGACACACAATCTGCT TCTAAAAGAGAGGAGTTGAGGAATGAGTTGGTTGCAGCGA AAGGGCTAAGGGTGATTAGTGGTGACTTCAACATTTCAGA TATAAAACTAAAAAACTGAATTGTAACTACAGATCAATAA AGGAATTCTCAGATTCAATTGAAGACCTTGGTCTTGTTGA ATTACCATTGCACAGGG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tg)24 |
|---|---|
| PCR product (bp) | 141 |
| fwd primer | emg21B11/U |
| fwd primer seq. | ccaggcatcacaaagcattatcag |
| rev primer | emg21B11/L |
| rev primer seq. | gatttcagagtgagcctctgctcc |
| fluor. primer | emg21B11/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-acaggcatcacaaagcattatcag |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 146 | 146 |
| EPL-1 | 144 | 144 |
| LS1151 (S.linneanum) | 135 | 135 |
| LS1934 | 137 | 146 |
| LS4021 (S. incanum) | 137 | 137 |
| Nakate Shinkuro | 137 | 146 |
| Senryo 2 | 144 | 144 |
| Shironasu | 137 | 137 |
| WCGR112-8 | 137 | 137 |
| White Egg | 137 | 137 |
| PI 286106 | 134 | 134 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 94.0 |
| ALF2 | AL01 | 86.6 |
| EW2009 | LG03 | 59.3 |
| LWA2010 | LWA_01 | 81.386 |
| LWAE2012 | E_01 | 84.782 |
| N28F2 | E_01 | 49.4 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
