| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 72.7 |
| Annotation | |
| Source Name | emg11M23 |
| Source Type | genomic |
| Source Sequence | NNGCAATCCATCATCATATAGTGGATGTCAATCTATGCAA TGCTTCTCCTTTATCCTGACTCTCTCTCTCTCTCTCTCAC ACACACACACACACACACACACACACGCACATAGAAGAAA TAACAAATAAAAGAGAAAAAATAAAAAATAAAAATCGGTC TAAAATTTATATGTGCAAATTTAAAAAGCTTTTCTTCTGT ATGAACACTTGCGTTTAACCATTATATTTCTGCTTTGTTT GTCCACTATTGTATTTGTTTCCTCTTTTGTAAGAATTTCT CGTTTTCTTGACAGGAAGAATGTGAAGATTTGTGTGAAAG AATAAAAGCTGGTTATCTCAAGAGGNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNN |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)9(ac)14 |
|---|---|
| PCR product (bp) | 186 |
| fwd primer | emg11M23/U |
| fwd primer seq. | tgcaatgcttctcctttatcctga |
| rev primer | emg11M23/L |
| rev primer seq. | tggttaaacgcaagtgttcatacag |
| fluor. primer | emg11M23/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-agcaatgcttctcctttatcctga |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 199 | 199 |
| EPL-1 | 187 | 187 |
| LS1151 (S.linneanum) | 204 | 204 |
| LS1934 | 193 | 193 |
| LS4021 (S. incanum) | 192 | 192 |
| Nakate Shinkuro | 197 | 197 |
| Senryo 2 | 187 | 187 |
| Shironasu | 194 | 194 |
| WCGR112-8 | 187 | 187 |
| White Egg | 201 | 201 |
| PI 286106 | 195 | 195 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 72.7 |
| ALF2 | AL01 | 65.0 |
| LW2010 | E_01 | 66.8 |
| LWA2010 | LWA_01 | 59.442 |
| LWAE2012 | E_01 | 63.309 |
| LWF2_2022 | E_01 | 119.5 |
| N28F2 | E_01 | 80.3 |
| NAF2 | NA01 | 46.5 |
| DB | Program | Definition | E-Value |
|---|
| EST Name | Species | Strain |
|---|
