| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 67.3 |
| Annotation | |
| Source Name | emg11K23 |
| Source Type | genomic |
| Source Sequence | TAGGCCTTGCTAGCAGAAGCCCTCACTGACGCATCTTTCT CTCAGAGATCATTTAGTGAACAAGCGGAGCAGCTGGCTAT GGAACAGCACAGATTGGCATTACAAAGAGGTCCTGCTAAT GTTTTTCAGTGGAAAGGTCATTCAGTCGGGTAAGCATTAA AACATCCATTTCAATTAGTTTTTCTGCTTTTCCATTGCAA ACTTAAATAATGGTGATTCATGAGTTTACTTATGTTCAAC TATTTGACCATCTCATGAATTTTGTGCCTTTTTAGAGATA TTTTGGTGTTAAATATCAGACTCGAACAATAACGTACCTT TTTTTAAAAAAATATTCAGACTGCAATGTCCTCACTTGGT TCAAAGACATAGCTAGAAGATTTTGACCTATAAGCTTCAA GTTGAGAGCTAAAATGAAGGACATCTGATGAGACTTCAGC TTGATGATAATGTGTTACTCTTCCTCCTAGTTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACA CACACACACACACACACACACACACACACACAGAGACATA ATGTGGAAACAGAAGAAGACATCTATCCAGTTTTAAAAAT AGCCCCCTTAGTTTTTTTTTTTAAAAAAAACCATGAAAAA TAGCTCAAAAATATAAGCAGCTTCTTCAGCTTTACATATA ATTTATAAAAATTCTTTAACATGAAAATCTTGCATTGAAA ATCTACTTCCATTGTTTTGCTTTTGTTATCATGGAATCAT CAGCTTATTATTCTTTGGAGATCATATGGCATAGCATTTG GCTGTTAATGTTTATTAGCTACTTAGAAGTCAATTTCAAT CACTCTAAGTCTTATCGCACGCATTACGTCCTCTCCATTT TGACGGAGTCCCCTGTCCTGGCTCCCATCGCCATATTAGA TTGACTTCCTAGATATAAGCTGAATCTCCAGATAGAAGAA AA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (tc)19(ac)21agagacataatgtggaaac(aga)3 |
|---|---|
| PCR product (bp) | 271 |
| fwd primer | emg11K23/U |
| fwd primer seq. | cagactgcaatgtcctcacttggt |
| rev primer | emg11K23/L |
| rev primer seq. | gggggctatttttaaaactggatag |
| fluor. primer | emg11K23/U_FAM |
| dye | FAM |
| fluor. Primer seq. | FAM-atgactgcaatgtcctcacttggt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 281 | 281 |
| EPL-1 | 279 | 279 |
| LS1151 (S.linneanum) | 238 | 238 |
| LS1934 | 279 | 279 |
| LS4021 (S. incanum) | 264 | 264 |
| Nakate Shinkuro | 279 | 279 |
| Senryo 2 | 279 | 279 |
| Shironasu | 279 | 279 |
| WCGR112-8 | 281 | 281 |
| White Egg | 281 | 281 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 67.3 |
| ALF2 | AL01 | 60.8 |
| EW2009 | LG03 | 80.2 |
| LWA2010 | LWA_01 | 56.07 |
| LWAE2012 | E_01 | 66.538 |
| NAF2 | NA01 | 47.6 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_MboI0031L02_T7_189950 Chromat_file:SL_MboI_31_L02-T7 SGN_GSS_ID:206776 (vector and quality trimmed) | 3e-24 |
| EST Name | Species | Strain |
|---|
