| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 71.3 |
| Annotation | |
| Source Name | emf21P02 |
| Source Type | genomic |
| Source Sequence | CTTAGTCACATCTCCCAAGAACACATCTTCCAACAACTGA TGTTTACCCTTTGGAAACCCAAGGGGGCAGAAGCAGATCT TTCGACTGCACCAAAAAACACCATAACACTCAACTGGGTC AGAAATTCCAAAGAAAATAACAAAACACAAAACCAAGAAA CGGATTTGGTATCCATCGATAGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG CGCAGATCCTACATCTAAACCACAAAATCATCAAAACGCC TGATAGGTTATTAAAAAAAAACCCAGTAAACAACTTAAAG CCATAAAACAAACAAACCAGTTTGACATCCTTGGCCTAGA TAAGAGCGAGTAGAGAAAAGAGAGATAATAACAAGAAAAA GAGAGAAAATAACCAAAATTATAAACAAATAATTCATAAA TAAAACAATGTAGTACCAGGTAATCGGGCAA |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ag)30 |
|---|---|
| PCR product (bp) | 292 |
| fwd primer | emf21P02/U |
| fwd primer seq. | cagaagcagatctttcgactgcac |
| rev primer | emf21P02/L |
| rev primer seq. | ctaggccaaggatgtcaaactggt |
| fluor. primer | emf21P02/U_PET |
| dye | PET |
| fluor. Primer seq. | PET-atgaagcagatctttcgactgcac |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 298 | 298 |
| EPL-1 | 300 | 300 |
| LS1151 (S.linneanum) | 267 | 267 |
| LS1934 | 271 | 298 |
| LS4021 (S. incanum) | 259 | 259 |
| Nakate Shinkuro | 298 | 298 |
| Senryo 2 | 300 | 300 |
| Shironasu | 281 | 281 |
| WCGR112-8 | 298 | 298 |
| White Egg | 271 | 271 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 71.3 |
| EW2009 | LG03 | 82.9 |
| LW2010 | E_01 | 67.1 |
| LWA2010 | LWA_01 | 58.752 |
| LWAE2012 | E_01 | 62.627 |
| LWF2_2022 | E_01 | 118.9 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0127B03_T7_332201 Chromat_file:SL_EcoRI_127_B03-T7 SGN_GSS_ID:349027 (vector and quality trimmed) | 1e-24 |
| TomatoBAC_end | BLASTN | SL_EcoRI0130P14_T7_334815 Chromat_file:SL_EcoRI_130_P14-T7 SGN_GSS_ID:351641 (vector and quality trimmed) | 8e-20 |
| EST Name | Species | Strain |
|---|
