| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 73.4 |
| Annotation | |
| Source Name | emf21H18 |
| Source Type | genomic |
| Source Sequence | CTGTCATGGTTTCCCATGGACTAAGTAGAATTCTTTGTCC TATCTACCACATCCCAAAGAAAGTTCCCTTGCAACCTTTC CACCTTTCCTATAACAACGGAAAGTGCATTGAAAAAGGAC AGACAATATATAGGAATACTAGATAAAGTGATCTTAATAA GCACTTCCTTCCCTGCTTTGGAAAAATATCTCTTTTGCGA CCTTGCTAGCCTCTTCTTTACTCTCTGAATGACCGGATTC CAAATTTCGGATTCAAGTCTTTAAATCTTCAAGATATAAA AGTTGCACTCTTTGATCGAGGAATAGGATCTTCATTTATT TGTCTCCCTCTTCTTTTGTGACCTGTCGTTCTTGTCAAAA TCGTGAAATACAAACTTGACTTGGAATTTTGTGAAATCTT CTTCAAAGTGGTTTGTACTCCTCTTCCCCCCATGTCATTG GTTTCTGTTGAACTCTTTAGTTTGGACCATTTTGGTGAAA CCAATGTCCAAAGATTGATTATCTTTGTTGTTGGCAATTT TATCCAAGTCTCTCTCTCTCTCTCTCTCTGATGGATGAAA AAGACCTTTGCTTTACTTTGATATTTTTTTATTGTAACAT GACTTGCACCAGATTTCGTGAAATGTTGCTGAGAATGTCA TTGTAGCATTTTATCAAGGTGCTCTATTATTATCTGTTTC GATGCTCCTACATTAGATTCATTTGTACTCATTGAACATG CATTTCTTCCTTTATTTTTCTGATTATGATGTGCTGTTTG AGAACC |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ttg)3gcaattttatccaag(tc)10 |
|---|---|
| PCR product (bp) | 297 |
| fwd primer | emf21H18/U |
| fwd primer seq. | ccctcttcttttgtgacctgtcgt |
| rev primer | emf21H18/L |
| rev primer seq. | ttcacgaaatctggtgcaagtcat |
| fluor. primer | emf21H18/U_NED |
| dye | NED |
| fluor. Primer seq. | NED-acctcttcttttgtgacctgtcgt |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 325 | 325 |
| EPL-1 | 307 | 307 |
| LS1151 (S.linneanum) | 307 | 307 |
| LS1934 | 307 | 309 |
| LS4021 (S. incanum) | 345 | 345 |
| Nakate Shinkuro | 307 | 309 |
| Senryo 2 | 307 | 309 |
| Shironasu | 323 | 323 |
| WCGR112-8 | 307 | 307 |
| White Egg | 307 | 307 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 73.4 |
| ALF2 | AL01 | 67.2 |
| LWA2010 | LWA_01 | 61.652 |
| LWAE2012 | E_01 | 64.775 |
| NAF2 | NA01 | 48.2 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | SL_EcoRI0121N06_SP6_328174 Chromat_file:SL_EcoRI_121_N06-SP6 SGN_GSS_ID:345000 (vector and quality trimmed) | 3e-08 |
| EST Name | Species | Strain |
|---|
