| Crop | eggplant |
|---|---|
| Population | AL2010 |
| Linkage Group | E_01 |
| Marker Type | SSR |
| Map Position | 3.0 |
| Annotation | |
| Source Name | emf01N04 |
| Source Type | genomic |
| Source Sequence | CTAGTTCCACTCTATCAGTATCAGCCACATGCATCACTTT TCTGAGGCTCCTCCAGATAAGTCTAAGGATCCACAGTAGA TGCAGACCCTGTGAACTCAGGCGGATTAATCCTCAAAAAT TCCCAAACACTAGAAGTGTCATGGGCATCCTATGAACCCA CTCTTTCTCTTGCAATAAATGCTGTGATAGCCTGGGCTAG AGTTTGAATAGCCTAGTGAAGCTCCAAAGTGTCATGTCTT TGTTTAATCACCTTTCTCTAAGACTTCTCTAGCCTAACTC TACCTCTCCTTATATCCACTATAGCCAACCTCTCATGCCT CCTCACCACGACACCATGCCTCCTCAACGAAACATCTATG CATCTTCTCCTCACATACCTCCATCAAACTTGAAATCAAA TTCCACAACATCACTGAAGAATTCATGAAATTCCAACTAT TGAATTCAAAACAACAAAAAATCCAATAAAGATCATAAAT TTACTTAAAACCCAATTTCAATACAACACATACACACAAA AACACACTCACACACACACACACAGATACTAACAAGAAAC AGAAAAGAGGCAAAAAAAGAAAAAACCTCTCTTGGAATCG TATCTGTTCTTGGATCAGCAGGCAATTCACGAACAAACGA ATGATCCCAATTAAG |
| Developer | NIVTS |
| Document | Nunome et al. (2009) Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.). Theor. Appl.Genet. 119: 1143-1153 |
| motif | (ac)3aaaa(ac)3tc(ac)7 |
|---|---|
| PCR product (bp) | 287 |
| fwd primer | emf01N04/U |
| fwd primer seq. | gcctcctcaacgaaacatctatgc |
| rev primer | emf01N04/L |
| rev primer seq. | tgcctgctgatccaagaacagata |
| fluor. primer | emf01N04/U_VIC |
| dye | VIC |
| fluor. Primer seq. | VIC-acctcctcaacgaaacatctatgc |
| PCR condition | 94C_3min->(94C_30s->65C_60s,-1C/cyc->72C_60s)x10->(94C_30s->55C_60s->72C_60s)x30->75C_5min->10C |
| polymerase | Roche Taq |
| Line | allele-1 | allele-2 |
|---|---|---|
| AE-P03 | 286 | 286 |
| EPL-1 | 286 | 286 |
| LS1151 (S.linneanum) | 308 | 308 |
| LS1934 | 284 | 287 |
| LS4021 (S. incanum) | 290 | 290 |
| Nakate Shinkuro | 286 | 286 |
| Senryo 2 | 287 | 287 |
| Shironasu | 287 | 287 |
| WCGR112-8 | 287 | 287 |
| White Egg | 286 | 286 |
| Population | Linkage Group | Position |
|---|---|---|
| AL2010 | E_01 | 3.0 |
| ALF2 | AL01 | 2.3 |
| LW2010 | E_01 | 3.2 |
| LWA2010 | LWA_01 | 3.404 |
| LWAE2012 | E_01 | 4.78 |
| LWF2_2022 | E_01 | 195.1 |
| DB | Program | Definition | E-Value |
|---|---|---|---|
| TomatoBAC_end | BLASTN | LE_HBa0244L24_T7_379519 Chromat_file:LE_HBa_244_L24-T7 SGN_GSS_ID:396713 (vector and quality trimmed) | 6e-06 |
| TomatoBAC_end | BLASTN | SL_MboI0137P05_T7_376269 Chromat_file:SL_MboI_137_P05-T7 SGN_GSS_ID:393480 (vector and quality trimmed) | 6e-06 |
| EST Name | Species | Strain |
|---|
